RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 TRBV10-3A0A0K0K1G6 114 aa9.95□□□□□ -0.82
USP3-204ENST00000540797 FSHBP01225 129 aa9.95□□□□□ -0.82
USP3-204ENST00000540797 SDIM1Q6ZPB5 146 aa9.95□□□□□ -0.82
USP3-204ENST00000540797 LST1O00453 97 aa9.95□□□□□ -0.82
USP3-204ENST00000540797 LINC00310P59036 64 aa9.95□□□□□ -0.82
USP3-204ENST00000540797 REG3GQ6UW15 175 aa9.95□□□□□ -0.82
USP3-204ENST00000540797 TET2Q6N021 2002 aaPredicted RBP9.94□□□□□ -0.82
USP3-204ENST00000540797 F8WDY8 70 aa9.94□□□□□ -0.82
USP3-204ENST00000540797 NDUFC2-KCTD14E9PQ53 114 aa9.94□□□□□ -0.82
USP3-204ENST00000540797 C2orf48Q96LS8 159 aa9.94□□□□□ -0.82
USP3-204ENST00000540797 C5orf47Q569G3 176 aa9.93□□□□□ -0.82
USP3-204ENST00000540797 ENHOQ6UWT2 76 aa9.93□□□□□ -0.82
USP3-204ENST00000540797 ATP5EP2Q5VTU8 51 aa9.93□□□□□ -0.82
USP3-204ENST00000540797 SBSPONQ8IVN8 264 aa9.93□□□□□ -0.82
USP3-204ENST00000540797 MDFIQ99750 246 aa9.92□□□□□ -0.82
USP3-204ENST00000540797 PCSK5Q92824 1860 aa9.92□□□□□ -0.82
USP3-204ENST00000540797 PRR3P79522 188 aaKnown RBP9.92□□□□□ -0.82
USP3-204ENST00000540797 C10orf25Q5T742 122 aa9.92□□□□□ -0.82
USP3-204ENST00000540797 CASC2Q6XLA1 102 aa9.92□□□□□ -0.82
USP3-204ENST00000540797 AGRNO00468 2067 aa9.91□□□□□ -0.82
USP3-204ENST00000540797 LINC01556Q5JQF7 62 aa9.91□□□□□ -0.82
USP3-204ENST00000540797 NDUFV3P56181 108 aaKnown RBP9.91□□□□□ -0.82
USP3-204ENST00000540797 TSPEAR-AS2P59090 65 aa9.91□□□□□ -0.82
USP3-204ENST00000540797 KIF25-AS1Q9Y6Z4 181 aa9.91□□□□□ -0.82
USP3-204ENST00000540797 C1orf137Q5JT78 98 aa9.9□□□□□ -0.83
USP3-204ENST00000540797 FAM19A4Q96LR4 140 aa9.89□□□□□ -0.83
USP3-204ENST00000540797 ESRGQ1W209 222 aa9.89□□□□□ -0.83
USP3-204ENST00000540797 LINC01561Q8N1V8 128 aa9.88□□□□□ -0.83
USP3-204ENST00000540797 Q6ZRU5 148 aa9.88□□□□□ -0.83
USP3-204ENST00000540797 MRPL55Q7Z7F7 128 aaKnown RBP9.88□□□□□ -0.83
USP3-204ENST00000540797 X6R8D5 127 aa9.88□□□□□ -0.83
USP3-204ENST00000540797 A0A096LNJ9 63 aa9.87□□□□□ -0.83
USP3-204ENST00000540797 SEC61GP60059 68 aa9.87□□□□□ -0.83
USP3-204ENST00000540797 F8P00451 2351 aa9.87□□□□□ -0.83
USP3-204ENST00000540797 CIRBP-AS1Q8TBR5 109 aa9.87□□□□□ -0.83
USP3-204ENST00000540797 ADAMTSL4-AS1Q5T5F5 129 aa9.86□□□□□ -0.83
USP3-204ENST00000540797 WFDC13Q8IUB5 93 aa9.86□□□□□ -0.83
USP3-204ENST00000540797 COL27A1Q8IZC6 1860 aaPredicted RBP9.86□□□□□ -0.83
USP3-204ENST00000540797 FLNBO75369 2602 aaKnown RBP9.85□□□□□ -0.83
USP3-204ENST00000540797 Q8N814 137 aa9.84□□□□□ -0.83
USP3-204ENST00000540797 MT-ATP8P03928 68 aa9.83□□□□□ -0.84
USP3-204ENST00000540797 NTM-AS1Q6ZSK4 140 aa9.83□□□□□ -0.84
USP3-204ENST00000540797 NDUFC2O95298 119 aa9.83□□□□□ -0.84
USP3-204ENST00000540797 C20orf197Q8N268 126 aa9.83□□□□□ -0.84
USP3-204ENST00000540797 H3BNG1 76 aa9.82□□□□□ -0.84
USP3-204ENST00000540797 PRYO14603 147 aa9.82□□□□□ -0.84
USP3-204ENST00000540797 LINC00315P59091 139 aa9.82□□□□□ -0.84
USP3-204ENST00000540797 Q9BRP9 147 aa9.79□□□□□ -0.84
USP3-204ENST00000540797 A0A087WYN8 130 aa9.79□□□□□ -0.84
USP3-204ENST00000540797 Q8NAQ8 132 aa9.79□□□□□ -0.84
USP3-204ENST00000540797 Q6JHZ5 121 aa9.78□□□□□ -0.84
USP3-204ENST00000540797 HECTD1Q9ULT8 2610 aa9.78□□□□□ -0.84
USP3-204ENST00000540797 UTRNP46939 3433 aa9.78□□□□□ -0.84
USP3-204ENST00000540797 A0A096LNT2 108 aa9.78□□□□□ -0.84
USP3-204ENST00000540797 KLK9Q2XQG4 91 aa9.78□□□□□ -0.84
USP3-204ENST00000540797 C22orf24Q9Y442 160 aa9.78□□□□□ -0.84
USP3-204ENST00000540797 DNAH12Q6ZR08 3092 aa9.77□□□□□ -0.85
USP3-204ENST00000540797 IGHV3OR16-9A0A0B4J2B5 98 aa9.77□□□□□ -0.85
USP3-204ENST00000540797 PRLHP81277 87 aa9.76□□□□□ -0.85
USP3-204ENST00000540797 FAM19A3Q7Z5A8 133 aa9.74□□□□□ -0.85
USP3-204ENST00000540797 IGLV5-39A0A0G2JS06 123 aa9.74□□□□□ -0.85
USP3-204ENST00000540797 WWC2-AS2Q96NR7 200 aa9.74□□□□□ -0.85
USP3-204ENST00000540797 NBDYA0A0U1RRE5 68 aa9.73□□□□□ -0.85
USP3-204ENST00000540797 UQCRQO14949 82 aa9.73□□□□□ -0.85
USP3-204ENST00000540797 Q9UF83 564 aa9.73□□□□□ -0.85
USP3-204ENST00000540797 A8MTW9 85 aa9.73□□□□□ -0.85
USP3-204ENST00000540797 J3KT08 172 aa9.73□□□□□ -0.85
USP3-204ENST00000540797 C3orf22Q8N5N4 141 aa9.72□□□□□ -0.85
USP3-204ENST00000540797 LINC01546A6NGU7 62 aa9.72□□□□□ -0.85
USP3-204ENST00000540797 LINC00588Q9Y4M8 146 aa9.72□□□□□ -0.85
USP3-204ENST00000540797 SMCR5Q8TEV8 140 aa9.71□□□□□ -0.86
USP3-204ENST00000540797 LINC00575Q6W349 94 aa9.71□□□□□ -0.86
USP3-204ENST00000540797 IGHV6-1A0A0B4J1U7 121 aa9.7□□□□□ -0.86
USP3-204ENST00000540797 LINC00337Q8N6G1 96 aa9.7□□□□□ -0.86
USP3-204ENST00000540797 C6orf48Q9UBA6 75 aa9.7□□□□□ -0.86
USP3-204ENST00000540797 IMUPQ9GZP8 106 aa9.69□□□□□ -0.86
USP3-204ENST00000540797 A0A087WSZ3 146 aa9.69□□□□□ -0.86
USP3-204ENST00000540797 Q8N3U1 123 aa9.69□□□□□ -0.86
USP3-204ENST00000540797 FAM30AQ9NZY2 134 aa9.68□□□□□ -0.86
USP3-204ENST00000540797 Q8N9L7 120 aa9.68□□□□□ -0.86
USP3-204ENST00000540797 KRTAP10-11P60412 298 aa9.67□□□□□ -0.86
USP3-204ENST00000540797 LINC00167Q96N53 147 aa9.67□□□□□ -0.86
USP3-204ENST00000540797 FAM236DA0A1B0GTK5 79 aa9.67□□□□□ -0.86
USP3-204ENST00000540797 K7EIL1 84 aa9.67□□□□□ -0.86
USP3-204ENST00000540797 FAM236CP0DP71 79 aa9.67□□□□□ -0.86
USP3-204ENST00000540797 RTL8CO15255 209 aa9.66□□□□□ -0.86
USP3-204ENST00000540797 SERP2Q8N6R1 65 aa9.66□□□□□ -0.86
USP3-204ENST00000540797 SNURFQ9Y675 71 aa9.66□□□□□ -0.86
USP3-204ENST00000540797 LIMD2Q9BT23 127 aa9.65□□□□□ -0.87
USP3-204ENST00000540797 KRTAP10-3P60369 221 aa9.64□□□□□ -0.87
USP3-204ENST00000540797 IGLV5-45A0A087WSX0 123 aa9.64□□□□□ -0.87
USP3-204ENST00000540797 C16orf90A8MZG2 172 aa9.63□□□□□ -0.87
USP3-204ENST00000540797 KRTAP1-3Q8IUG1 177 aa9.63□□□□□ -0.87
USP3-204ENST00000540797 FAM240AA0A1B0GVK7 77 aa9.63□□□□□ -0.87
USP3-204ENST00000540797 PRRC2CQ9Y520 2896 aaKnown RBP9.62□□□□□ -0.87
USP3-204ENST00000540797 PRR4Q16378 134 aa9.62□□□□□ -0.87
USP3-204ENST00000540797 CSNK1G2-AS1Q8NCQ2 148 aa9.62□□□□□ -0.87
USP3-204ENST00000540797 FAM229AH3BQW9 127 aa9.62□□□□□ -0.87
USP3-204ENST00000540797 NDUFC1O43677 76 aa9.62□□□□□ -0.87
USP3-204ENST00000540797 Q6ZVQ6 151 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms