RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 GAGE6Q13070 117 aa4.57□□□□□ -1.68
YBX3-209ENST00000540747 ZNF56Q15929 161 aa4.57□□□□□ -1.68
YBX3-209ENST00000540747 C15orf56Q8N910 161 aa4.57□□□□□ -1.68
YBX3-209ENST00000540747 CBY1Q9Y3M2 126 aa4.57□□□□□ -1.68
YBX3-209ENST00000540747 IGLV4-60A0A075B6I1 120 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 IGLV10-54A0A075B6I4 117 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 TRBV25-1A0A075B6N4 114 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 TRAV12-1A0A0B4J245 112 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 TRAV8-4A0A0B4J246 113 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 A0A1B0GUV1 79 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 F5H697 171 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 SMIM13P0DJ93 91 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 AMMECR1LQ6DCA0 310 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 GTF2H5Q6ZYL4 71 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 HIGD1BQ9P298 99 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 TP73-AS1Q9UF72 201 aa4.56□□□□□ -1.68
YBX3-209ENST00000540747 CHTOPQ9Y3Y2 248 aaKnown RBP4.56□□□□□ -1.68
YBX3-209ENST00000540747 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.55□□□□□ -1.68
YBX3-209ENST00000540747 GAGE10A6NGK3 116 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 C9orf118A6NHY6 69 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 M0QY20 66 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 VCYO14598 125 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 PLNP26678 52 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 SRSF9Q13242 221 aaKnown RBP eCLIP4.55□□□□□ -1.68
YBX3-209ENST00000540747 ZC2HC1BQ5TFG8 222 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 ERASQ7Z444 233 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 PCP2Q8IVA1 136 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 C7orf33Q8WU49 177 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 TOMM6Q96B49 74 aa4.55□□□□□ -1.68
YBX3-209ENST00000540747 MRPL35Q9NZE8 188 aaKnown RBP4.55□□□□□ -1.68
YBX3-209ENST00000540747 F8VRH5 84 aa4.54□□□□□ -1.68
YBX3-209ENST00000540747 RPL32P62910 135 aaKnown RBP4.54□□□□□ -1.68
YBX3-209ENST00000540747 COX6A2Q02221 97 aa4.54□□□□□ -1.68
YBX3-209ENST00000540747 TAL2Q16559 108 aa4.54□□□□□ -1.68
YBX3-209ENST00000540747 C2orf66Q6UXQ4 117 aa4.54□□□□□ -1.68
YBX3-209ENST00000540747 RPL39LQ96EH5 51 aaKnown RBP4.54□□□□□ -1.68
YBX3-209ENST00000540747 CYSLTR1Q9Y271 337 aa4.54□□□□□ -1.68
YBX3-209ENST00000540747 H3BUT2 72 aa4.53□□□□□ -1.68
YBX3-209ENST00000540747 PAPPA-AS1Q5QFB9 102 aa4.53□□□□□ -1.68
YBX3-209ENST00000540747 SPINK6Q6UWN8 80 aa4.53□□□□□ -1.68
YBX3-209ENST00000540747 RAB37Q96AX2 223 aa4.53□□□□□ -1.68
YBX3-209ENST00000540747 TMEM141Q96I45 108 aa4.53□□□□□ -1.68
YBX3-209ENST00000540747 KIR2DL4Q99706 377 aa4.53□□□□□ -1.68
YBX3-209ENST00000540747 A0A096LNI7 61 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 GVQW2A0A096LPI5 108 aaPredicted RBP4.52□□□□□ -1.69
YBX3-209ENST00000540747 IGKV2D-26A0A0A0MRZ7 120 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 FABP2P12104 132 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 HERVK_113P61574 105 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 SUMO4Q6EEV6 95 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 HIST1H4GQ99525 98 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 TMEM243Q9BU79 118 aa4.52□□□□□ -1.69
YBX3-209ENST00000540747 TRBV6-5A0A0K0K1A5 114 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 MYMXA0A1B0GTQ4 84 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 GAGE12HA6NDE8 117 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 K7EP34 96 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 POLR2KP53803 58 aaKnown RBP4.51□□□□□ -1.69
YBX3-209ENST00000540747 PMVKQ15126 192 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 REG3GQ6UW15 175 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 CEND1Q8N111 149 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 OR5A1Q8NGJ0 315 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 DPH3Q96FX2 82 aa4.51□□□□□ -1.69
YBX3-209ENST00000540747 IGKV2-24A0A0C4DH68 120 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 A0A1W2PPM0 123 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 SDHAF1A6NFY7 115 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 RNF151Q2KHN1 245 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 HIGD2BQ4VC39 106 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 CFAP161Q6P656 301 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 TTTY13Q9BZ97 58 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 SPCS1Q9Y6A9 102 aa4.5□□□□□ -1.69
YBX3-209ENST00000540747 E9PLD3 99 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 I3L3M4 83 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 K7ERU9 68 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 FXYD2P54710 66 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 FOXI1Q12951 378 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 CHCHD10Q8WYQ3 142 aaPredicted RBP4.49□□□□□ -1.69
YBX3-209ENST00000540747 TIMM17AQ99595 171 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 NAA38Q9BRA0 125 aaKnown RBP4.49□□□□□ -1.69
YBX3-209ENST00000540747 CST9LQ9H4G1 147 aa4.49□□□□□ -1.69
YBX3-209ENST00000540747 NHP2Q9NX24 153 aaKnown RBP4.49□□□□□ -1.69
YBX3-209ENST00000540747 TRBV27A0A0K0K1C4 114 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 TMEM238LA0A1B0GVL6 79 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 IGIPA6NJ69 53 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 A6NJY4 79 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 ZNF815PA8K554 130 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 OCIAD2Q56VL3 154 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 TMEM170BQ5T4T1 132 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 SCGB1D4Q6XE38 83 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 Q6ZRP5 223 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 VPS25Q9BRG1 176 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 LINC00474Q9P2X8 69 aa4.48□□□□□ -1.69
YBX3-209ENST00000540747 COTL1Q14019 142 aa4.47□□□□□ -1.69
YBX3-209ENST00000540747 KRTAP9-2Q9BYQ4 174 aa4.47□□□□□ -1.69
YBX3-209ENST00000540747 VCX2Q9H322 139 aa4.47□□□□□ -1.69
YBX3-209ENST00000540747 C11orf86A6NJI1 115 aa4.46□□□□□ -1.7
YBX3-209ENST00000540747 K7ERJ3 54 aa4.46□□□□□ -1.7
YBX3-209ENST00000540747 UBE2L6O14933 153 aa4.46□□□□□ -1.7
YBX3-209ENST00000540747 TSHBP01222 138 aa4.46□□□□□ -1.7
YBX3-209ENST00000540747 LGALS3P17931 250 aaKnown RBP4.46□□□□□ -1.7
YBX3-209ENST00000540747 RPL39P62891 51 aaKnown RBP4.46□□□□□ -1.7
YBX3-209ENST00000540747 IGKV3OR2-268A0A0C4DH90 116 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms