RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 TRACP01848 142 aa7.52□□□□□ -1.21
CLIP1-213ENST00000540338 SMCPP49901 116 aaPredicted RBP7.52□□□□□ -1.21
CLIP1-213ENST00000540338 SPATA25Q9BR10 227 aa7.52□□□□□ -1.21
CLIP1-213ENST00000540338 CELSR2Q9HCU4 2923 aa7.52□□□□□ -1.21
CLIP1-213ENST00000540338 GHRHP01286 108 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 C15orf53Q8NAA6 179 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 TMEM126AQ9H061 195 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 IGKV2D-24A0A075B6R9 120 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 C11orf45Q8TAV5 145 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 ANAPC13Q9BS18 74 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 CAMK2N2Q96S95 79 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 LECT2O14960 151 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 WFDC9Q8NEX5 89 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 MRAPQ8TCY5 172 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 Q9HAA7 133 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 CELA1Q9UNI1 258 aa7.51□□□□□ -1.21
CLIP1-213ENST00000540338 KPRPQ5T749 579 aaPredicted RBP7.5□□□□□ -1.21
CLIP1-213ENST00000540338 ACYP1P07311 99 aa7.5□□□□□ -1.21
CLIP1-213ENST00000540338 ORMDL1Q9P0S3 153 aa7.5□□□□□ -1.21
CLIP1-213ENST00000540338 LINC00612Q8N6U2 182 aa7.49□□□□□ -1.21
CLIP1-213ENST00000540338 DEFB131BA0A096LNP1 70 aa7.49□□□□□ -1.21
CLIP1-213ENST00000540338 LINC01561Q8N1V8 128 aa7.49□□□□□ -1.21
CLIP1-213ENST00000540338 M0QXV9 152 aa7.49□□□□□ -1.21
CLIP1-213ENST00000540338 SOSTDC1Q6X4U4 206 aa7.49□□□□□ -1.21
CLIP1-213ENST00000540338 RETNQ9HD89 108 aa7.49□□□□□ -1.21
CLIP1-213ENST00000540338 NCR3O14931 201 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 SMIM11BQ8TCY0 68 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 COX17Q14061 63 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 ATRQ13535 2644 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 RPL28P46779 137 aaKnown RBP7.48□□□□□ -1.21
CLIP1-213ENST00000540338 Q8NAQ8 132 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 LAMTOR3Q9UHA4 124 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 ITPR2Q14571 2701 aa7.48□□□□□ -1.21
CLIP1-213ENST00000540338 MT-ATP8P03928 68 aa7.47□□□□□ -1.21
CLIP1-213ENST00000540338 FBN2P35556 2912 aa7.47□□□□□ -1.21
CLIP1-213ENST00000540338 CSMD1Q96PZ7 3565 aa7.46□□□□□ -1.21
CLIP1-213ENST00000540338 LINC00526Q96FQ7 95 aa7.46□□□□□ -1.22
CLIP1-213ENST00000540338 SETXQ7Z333 2677 aaKnown RBP7.46□□□□□ -1.22
CLIP1-213ENST00000540338 EIF4EBP3O60516 100 aaPredicted RBP7.45□□□□□ -1.22
CLIP1-213ENST00000540338 HIGD2BQ4VC39 106 aa7.45□□□□□ -1.22
CLIP1-213ENST00000540338 RMI2Q96E14 147 aa7.45□□□□□ -1.22
CLIP1-213ENST00000540338 LYPD5Q6UWN5 251 aa7.45□□□□□ -1.22
CLIP1-213ENST00000540338 MXRA5Q9NR99 2828 aa7.45□□□□□ -1.22
CLIP1-213ENST00000540338 Q6ZTC4 211 aa7.45□□□□□ -1.22
CLIP1-213ENST00000540338 LINC00337Q8N6G1 96 aa7.45□□□□□ -1.22
CLIP1-213ENST00000540338 SPATA3Q8NHX4 192 aa7.44□□□□□ -1.22
CLIP1-213ENST00000540338 A0A0J9YWU9 116 aa7.44□□□□□ -1.22
CLIP1-213ENST00000540338 RPL18AQ02543 176 aaKnown RBP7.44□□□□□ -1.22
CLIP1-213ENST00000540338 CYSRT1A8MQ03 144 aa7.44□□□□□ -1.22
CLIP1-213ENST00000540338 XGP55808 180 aa7.44□□□□□ -1.22
CLIP1-213ENST00000540338 UNQ6190/PRO20217Q6UXQ8 127 aa7.44□□□□□ -1.22
CLIP1-213ENST00000540338 C9orf116Q5BN46 136 aaPredicted RBP7.43□□□□□ -1.22
CLIP1-213ENST00000540338 UBE2DNLQ8IWF7 75 aa7.43□□□□□ -1.22
CLIP1-213ENST00000540338 NANOS2P60321 138 aaKnown RBP7.43□□□□□ -1.22
CLIP1-213ENST00000540338 MUC7Q8TAX7 377 aa7.43□□□□□ -1.22
CLIP1-213ENST00000540338 NKAPP1Q8N9T2 125 aa7.43□□□□□ -1.22
CLIP1-213ENST00000540338 KRTAP24-1Q3LI83 254 aa7.43□□□□□ -1.22
CLIP1-213ENST00000540338 KLK5Q9Y337 293 aaPredicted RBP7.43□□□□□ -1.22
CLIP1-213ENST00000540338 CELSR1Q9NYQ6 3014 aa7.42□□□□□ -1.22
CLIP1-213ENST00000540338 SLPIP03973 132 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 XAGE1AQ9HD64 81 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 TMEM256-PLSCR3K7ERE1 68 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 C6orf99Q4VX62 202 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 Q8N3U1 123 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 PPDPFQ9H3Y8 114 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 JMJD7-PLA2G4BH0Y9G9 81 aa7.41□□□□□ -1.22
CLIP1-213ENST00000540338 PRR3P79522 188 aaKnown RBP7.41□□□□□ -1.22
CLIP1-213ENST00000540338 SVEP1Q4LDE5 3571 aa7.4□□□□□ -1.22
CLIP1-213ENST00000540338 TRAV10A0A0B4J240 114 aa7.4□□□□□ -1.22
CLIP1-213ENST00000540338 CDIP1Q9H305 208 aa7.4□□□□□ -1.22
CLIP1-213ENST00000540338 C14orf132Q9NPU4 83 aa7.4□□□□□ -1.22
CLIP1-213ENST00000540338 NDUFC2O95298 119 aa7.4□□□□□ -1.22
CLIP1-213ENST00000540338 DIRC1Q969H9 104 aa7.4□□□□□ -1.22
CLIP1-213ENST00000540338 PSCAO43653 123 aa7.4□□□□□ -1.23
CLIP1-213ENST00000540338 WFDC10BQ8IUB3 73 aa7.4□□□□□ -1.23
CLIP1-213ENST00000540338 C6orf223Q8N319 242 aa7.4□□□□□ -1.23
CLIP1-213ENST00000540338 PRB2P02812 416 aaPredicted RBP7.39□□□□□ -1.23
CLIP1-213ENST00000540338 NF1P21359 2839 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 A0A087WYN8 130 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 FAM240AA0A1B0GVK7 77 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 LINC00643Q86TS7 51 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 hADV29S1A0JD25 119 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 H3BNG1 76 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 IGKV2-28A0A075B6P5 120 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 IGKV2D-28P01615 120 aa7.38□□□□□ -1.23
CLIP1-213ENST00000540338 A0A1B0GX51 115 aa7.37□□□□□ -1.23
CLIP1-213ENST00000540338 DSCR8Q96T75 97 aa7.37□□□□□ -1.23
CLIP1-213ENST00000540338 HIST1H4AP62805 103 aaKnown RBP7.37□□□□□ -1.23
CLIP1-213ENST00000540338 UBL5Q9BZL1 73 aa7.37□□□□□ -1.23
CLIP1-213ENST00000540338 GCN1Q92616 2671 aaKnown RBP7.36□□□□□ -1.23
CLIP1-213ENST00000540338 H3BQ85 93 aa7.36□□□□□ -1.23
CLIP1-213ENST00000540338 SYCNQ0VAF6 134 aa7.36□□□□□ -1.23
CLIP1-213ENST00000540338 COX7BP24311 80 aa7.36□□□□□ -1.23
CLIP1-213ENST00000540338 FAM218AQ96MZ4 157 aa7.36□□□□□ -1.23
CLIP1-213ENST00000540338 EGFEM1PQ0D2K5 195 aa7.35□□□□□ -1.23
CLIP1-213ENST00000540338 KRTAP10-11P60412 298 aa7.35□□□□□ -1.23
CLIP1-213ENST00000540338 DPH3Q96FX2 82 aa7.35□□□□□ -1.23
CLIP1-213ENST00000540338 RBM3P98179 157 aaKnown RBP7.34□□□□□ -1.23
CLIP1-213ENST00000540338 ESRGQ1W209 222 aa7.34□□□□□ -1.23
CLIP1-213ENST00000540338 ENHOQ6UWT2 76 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms