RNA–Protein interactions for RNA: ENST00000540017.6

SNRPA1-203, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 1 (best)

Gene SNRPA1, Length 506 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-203ENST00000540017 TLX1NBP0CAT3 122 aa11.45□□□□□ -0.58
SNRPA1-203ENST00000540017 C9orf116Q5BN46 136 aaPredicted RBP11.45□□□□□ -0.58
SNRPA1-203ENST00000540017 Q8IZM0 81 aa11.45□□□□□ -0.58
SNRPA1-203ENST00000540017 COLCA2A8K830 154 aa11.44□□□□□ -0.58
SNRPA1-203ENST00000540017 C6orf226Q5I0X4 101 aa11.44□□□□□ -0.58
SNRPA1-203ENST00000540017 PACRGQ96M98 296 aaPredicted RBP11.44□□□□□ -0.58
SNRPA1-203ENST00000540017 TRBV30A0A0K0K1B3 111 aa11.43□□□□□ -0.58
SNRPA1-203ENST00000540017 PRSS2P07478 247 aa11.43□□□□□ -0.58
SNRPA1-203ENST00000540017 NDUFA6P56556 154 aa11.43□□□□□ -0.58
SNRPA1-203ENST00000540017 C7orf33Q8WU49 177 aa11.43□□□□□ -0.58
SNRPA1-203ENST00000540017 CHCHD1Q96BP2 118 aaKnown RBP11.43□□□□□ -0.58
SNRPA1-203ENST00000540017 LRP1Q07954 4544 aaKnown RBP11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 SPINK8P0C7L1 97 aa11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 IGLC3P0DOY3 106 aa11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 CKS1BP61024 79 aa11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 GAGE2EQ4V326 116 aa11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 GAGE2DQ9UEU5 116 aa11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 HERC1Q15751 4861 aa11.41□□□□□ -0.58
SNRPA1-203ENST00000540017 FAM168BA1KXE4 195 aa11.4□□□□□ -0.58
SNRPA1-203ENST00000540017 SCO1O75880 301 aa11.4□□□□□ -0.58
SNRPA1-203ENST00000540017 ATP5LO75964 103 aa11.4□□□□□ -0.58
SNRPA1-203ENST00000540017 NDUFC2-KCTD14E9PQ53 114 aa11.39□□□□□ -0.59
SNRPA1-203ENST00000540017 LINC00310P59036 64 aa11.39□□□□□ -0.59
SNRPA1-203ENST00000540017 BAGE3Q86Y29 109 aa11.39□□□□□ -0.59
SNRPA1-203ENST00000540017 FAM19A2Q8N3H0 131 aa11.39□□□□□ -0.59
SNRPA1-203ENST00000540017 FAT3Q8TDW7 4589 aa11.39□□□□□ -0.59
SNRPA1-203ENST00000540017 ZNF22P17026 224 aaPredicted RBP11.38□□□□□ -0.59
SNRPA1-203ENST00000540017 PRR3P79522 188 aaKnown RBP11.38□□□□□ -0.59
SNRPA1-203ENST00000540017 KRTAP7-1Q8IUC3 87 aa11.38□□□□□ -0.59
SNRPA1-203ENST00000540017 COX7B2Q8TF08 81 aa11.38□□□□□ -0.59
SNRPA1-203ENST00000540017 KRTAP29-1A8MX34 341 aaPredicted RBP11.37□□□□□ -0.59
SNRPA1-203ENST00000540017 F8VRH5 84 aa11.37□□□□□ -0.59
SNRPA1-203ENST00000540017 C11orf86A6NJI1 115 aa11.36□□□□□ -0.59
SNRPA1-203ENST00000540017 HSBP1O75506 76 aa11.36□□□□□ -0.59
SNRPA1-203ENST00000540017 C9orf129Q5T035 196 aaKnown RBP11.36□□□□□ -0.59
SNRPA1-203ENST00000540017 PHF5AQ7RTV0 110 aaKnown RBP11.36□□□□□ -0.59
SNRPA1-203ENST00000540017 H3BRM9 83 aa11.35□□□□□ -0.59
SNRPA1-203ENST00000540017 SERF1AO75920 110 aa11.35□□□□□ -0.59
SNRPA1-203ENST00000540017 IFI27L1Q96BM0 104 aa11.35□□□□□ -0.59
SNRPA1-203ENST00000540017 IGLV5-39A0A0G2JS06 123 aa11.34□□□□□ -0.59
SNRPA1-203ENST00000540017 NUPR1O60356 82 aa11.34□□□□□ -0.59
SNRPA1-203ENST00000540017 CXCL5P42830 114 aa11.34□□□□□ -0.59
SNRPA1-203ENST00000540017 FAM19A5Q7Z5A7 132 aaPredicted RBP11.34□□□□□ -0.59
SNRPA1-203ENST00000540017 DMBT1Q9UGM3 2413 aaPredicted RBP11.34□□□□□ -0.59
SNRPA1-203ENST00000540017 CHTOPQ9Y3Y2 248 aaKnown RBP11.33□□□□□ -0.6
SNRPA1-203ENST00000540017 KRTAP11-1Q8IUC1 163 aa11.32□□□□□ -0.6
SNRPA1-203ENST00000540017 TRAV12-1A0A0B4J245 112 aa11.31□□□□□ -0.6
SNRPA1-203ENST00000540017 J3QL48 77 aa11.31□□□□□ -0.6
SNRPA1-203ENST00000540017 XAGE1AQ9HD64 81 aa11.31□□□□□ -0.6
SNRPA1-203ENST00000540017 OXTP01178 125 aa11.3□□□□□ -0.6
SNRPA1-203ENST00000540017 TMEM170BQ5T4T1 132 aa11.3□□□□□ -0.6
SNRPA1-203ENST00000540017 PSORS1C2Q9UIG4 136 aa11.3□□□□□ -0.6
SNRPA1-203ENST00000540017 SERTAD4-AS1Q5TG53 156 aa11.28□□□□□ -0.6
SNRPA1-203ENST00000540017 M0QXV9 152 aa11.27□□□□□ -0.61
SNRPA1-203ENST00000540017 LEPROTL1O95214 131 aa11.26□□□□□ -0.61
SNRPA1-203ENST00000540017 SRSF9Q13242 221 aaKnown RBP eCLIP11.26□□□□□ -0.61
SNRPA1-203ENST00000540017 TMEM223A0PJW6 202 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 H0Y8G0 127 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BKO60814 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BJP06899 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BOP23527 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BBP33778 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BDP58876 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BCP62807 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 ODF1Q14990 250 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST2H2BEQ16778 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BHQ93079 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BNQ99877 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 HIST1H2BMQ99879 126 aa11.25□□□□□ -0.61
SNRPA1-203ENST00000540017 FABP4P15090 132 aa11.24□□□□□ -0.61
SNRPA1-203ENST00000540017 C1orf137Q5JT78 98 aa11.23□□□□□ -0.61
SNRPA1-203ENST00000540017 ZNF625Q96I27 306 aaPredicted RBP11.23□□□□□ -0.61
SNRPA1-203ENST00000540017 PFN2P35080 140 aa11.22□□□□□ -0.61
SNRPA1-203ENST00000540017 SPINK6Q6UWN8 80 aa11.22□□□□□ -0.61
SNRPA1-203ENST00000540017 C22orf24Q9Y442 160 aa11.22□□□□□ -0.61
SNRPA1-203ENST00000540017 MT1HL1P0DM35 61 aa11.21□□□□□ -0.61
SNRPA1-203ENST00000540017 HSPB8Q9UJY1 196 aa11.21□□□□□ -0.61
SNRPA1-203ENST00000540017 UBE2BP63146 152 aa11.2□□□□□ -0.62
SNRPA1-203ENST00000540017 ERG28Q9UKR5 140 aa11.2□□□□□ -0.62
SNRPA1-203ENST00000540017 PMCHL2Q9BQD1 86 aa11.19□□□□□ -0.62
SNRPA1-203ENST00000540017 PLA2G2DQ9UNK4 145 aa11.18□□□□□ -0.62
SNRPA1-203ENST00000540017 IGLV7-43P04211 117 aa11.17□□□□□ -0.62
SNRPA1-203ENST00000540017 MRPL55Q7Z7F7 128 aaKnown RBP11.16□□□□□ -0.62
SNRPA1-203ENST00000540017 SND1-IT1Q9HBX3 110 aa11.16□□□□□ -0.62
SNRPA1-203ENST00000540017 TP73-AS1Q9UF72 201 aa11.16□□□□□ -0.62
SNRPA1-203ENST00000540017 COX17Q14061 63 aa11.15□□□□□ -0.62
SNRPA1-203ENST00000540017 SFTA2Q6UW10 78 aa11.15□□□□□ -0.62
SNRPA1-203ENST00000540017 LINC01600Q96MT4 127 aa11.15□□□□□ -0.62
SNRPA1-203ENST00000540017 IGLV5-37A0A075B6J1 123 aa11.14□□□□□ -0.63
SNRPA1-203ENST00000540017 DPM2O94777 84 aa11.14□□□□□ -0.63
SNRPA1-203ENST00000540017 PLNP26678 52 aa11.14□□□□□ -0.63
SNRPA1-203ENST00000540017 LBHQ53QV2 105 aaPredicted RBP11.14□□□□□ -0.63
SNRPA1-203ENST00000540017 LINC00167Q96N53 147 aa11.14□□□□□ -0.63
SNRPA1-203ENST00000540017 TNXBP22105 4242 aa11.14□□□□□ -0.63
SNRPA1-203ENST00000540017 TSPEAR-AS2P59090 65 aa11.13□□□□□ -0.63
SNRPA1-203ENST00000540017 Q8NDZ9 215 aa11.13□□□□□ -0.63
SNRPA1-203ENST00000540017 MAP1LC3CQ9BXW4 147 aa11.13□□□□□ -0.63
SNRPA1-203ENST00000540017 A0A0U1RRA0 63 aa11.12□□□□□ -0.63
SNRPA1-203ENST00000540017 GAGE10A6NGK3 116 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms