RNA–Protein interactions for RNA: ENST00000536717.5

TNFRSF1A-209, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 2

Gene TNFRSF1A, Length 1,503 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-209ENST00000536717 F8VRH5 84 aa11.43□□□□□ -0.58
TNFRSF1A-209ENST00000536717 HIGD2BQ4VC39 106 aa11.43□□□□□ -0.58
TNFRSF1A-209ENST00000536717 CDKN2A-AS1Q9UH64 79 aa11.43□□□□□ -0.58
TNFRSF1A-209ENST00000536717 IGLV4-69A0A075B6H9 119 aa11.42□□□□□ -0.58
TNFRSF1A-209ENST00000536717 GVQW2A0A096LPI5 108 aaPredicted RBP11.42□□□□□ -0.58
TNFRSF1A-209ENST00000536717 LINC01561Q8N1V8 128 aa11.42□□□□□ -0.58
TNFRSF1A-209ENST00000536717 IGLV5-45A0A087WSX0 123 aa11.41□□□□□ -0.58
TNFRSF1A-209ENST00000536717 ZNF561-AS1K7EIQ3 104 aa11.41□□□□□ -0.58
TNFRSF1A-209ENST00000536717 CIRBPQ14011 172 aaKnown RBP11.41□□□□□ -0.58
TNFRSF1A-209ENST00000536717 OR10D4PQ8NGN7 298 aa11.41□□□□□ -0.58
TNFRSF1A-209ENST00000536717 LRP1Q07954 4544 aaKnown RBP11.41□□□□□ -0.58
TNFRSF1A-209ENST00000536717 IGHV3-64A0A075B6Q5 118 aa11.4□□□□□ -0.58
TNFRSF1A-209ENST00000536717 H3BRM9 83 aa11.4□□□□□ -0.58
TNFRSF1A-209ENST00000536717 ODF1Q14990 250 aa11.4□□□□□ -0.58
TNFRSF1A-209ENST00000536717 ORAOV1Q8WV07 137 aa11.4□□□□□ -0.58
TNFRSF1A-209ENST00000536717 MRPL35Q9NZE8 188 aaKnown RBP11.4□□□□□ -0.58
TNFRSF1A-209ENST00000536717 C11orf86A6NJI1 115 aa11.4□□□□□ -0.59
TNFRSF1A-209ENST00000536717 FAT3Q8TDW7 4589 aa11.39□□□□□ -0.59
TNFRSF1A-209ENST00000536717 SYS1-DBNDD2H3BUS1 97 aa11.39□□□□□ -0.59
TNFRSF1A-209ENST00000536717 SPAG11BQ08648 103 aa11.39□□□□□ -0.59
TNFRSF1A-209ENST00000536717 CHTF8P0CG12 524 aa11.38□□□□□ -0.59
TNFRSF1A-209ENST00000536717 ZNF22P17026 224 aaPredicted RBP11.38□□□□□ -0.59
TNFRSF1A-209ENST00000536717 TMEM170BQ5T4T1 132 aa11.38□□□□□ -0.59
TNFRSF1A-209ENST00000536717 KRTDAPP60985 99 aa11.37□□□□□ -0.59
TNFRSF1A-209ENST00000536717 C12orf57Q99622 126 aa11.37□□□□□ -0.59
TNFRSF1A-209ENST00000536717 C3orf79P0CE67 100 aa11.36□□□□□ -0.59
TNFRSF1A-209ENST00000536717 PLNP26678 52 aa11.36□□□□□ -0.59
TNFRSF1A-209ENST00000536717 PET117Q6UWS5 81 aa11.36□□□□□ -0.59
TNFRSF1A-209ENST00000536717 LINC00526Q96FQ7 95 aa11.36□□□□□ -0.59
TNFRSF1A-209ENST00000536717 SMIM1B2RUZ4 78 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 DPM2O94777 84 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 PRSS2P07478 247 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 SPINK8P0C7L1 97 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 PYY3Q5JQD4 70 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 SPACA4Q8TDM5 124 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 TOMM7Q9P0U1 55 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 JOSD1Q15040 202 aaPredicted RBP11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 C2orf48Q96LS8 159 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 PMCHL2Q9BQD1 86 aa11.35□□□□□ -0.59
TNFRSF1A-209ENST00000536717 A0A087WYN8 130 aa11.34□□□□□ -0.59
TNFRSF1A-209ENST00000536717 RPL37AP61513 92 aaKnown RBP11.34□□□□□ -0.59
TNFRSF1A-209ENST00000536717 CAMK2N2Q96S95 79 aa11.34□□□□□ -0.59
TNFRSF1A-209ENST00000536717 F8WDY8 70 aa11.33□□□□□ -0.6
TNFRSF1A-209ENST00000536717 IGKCP01834 107 aa11.33□□□□□ -0.6
TNFRSF1A-209ENST00000536717 LINC01545Q5VT33 79 aa11.33□□□□□ -0.6
TNFRSF1A-209ENST00000536717 Q8IZM0 81 aa11.33□□□□□ -0.6
TNFRSF1A-209ENST00000536717 C20orf202A1L168 122 aa11.32□□□□□ -0.6
TNFRSF1A-209ENST00000536717 SYCNQ0VAF6 134 aa11.32□□□□□ -0.6
TNFRSF1A-209ENST00000536717 KIAA0087Q14695 138 aa11.32□□□□□ -0.6
TNFRSF1A-209ENST00000536717 C6orf226Q5I0X4 101 aa11.32□□□□□ -0.6
TNFRSF1A-209ENST00000536717 CARD19Q96LW7 228 aa11.32□□□□□ -0.6
TNFRSF1A-209ENST00000536717 NDUFA1O15239 70 aa11.31□□□□□ -0.6
TNFRSF1A-209ENST00000536717 DPH3Q96FX2 82 aa11.31□□□□□ -0.6
TNFRSF1A-209ENST00000536717 TMEM223A0PJW6 202 aa11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 CKS1BP61024 79 aa11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 COX7B2Q8TF08 81 aa11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 PLAC8Q9NZF1 115 aa11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 IGKV2-24A0A0C4DH68 120 aa11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 IGLV5-39A0A0G2JS06 123 aa11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 KRTAP29-1A8MX34 341 aaPredicted RBP11.3□□□□□ -0.6
TNFRSF1A-209ENST00000536717 A0A096LNI7 61 aa11.29□□□□□ -0.6
TNFRSF1A-209ENST00000536717 CXCL5P42830 114 aa11.29□□□□□ -0.6
TNFRSF1A-209ENST00000536717 HNRNPA3P51991 378 aaKnown RBP11.29□□□□□ -0.6
TNFRSF1A-209ENST00000536717 Q6ZRU5 148 aa11.29□□□□□ -0.6
TNFRSF1A-209ENST00000536717 HERVK_113P61574 105 aa11.28□□□□□ -0.6
TNFRSF1A-209ENST00000536717 MAJINQ3KP22 176 aa11.28□□□□□ -0.6
TNFRSF1A-209ENST00000536717 J3QL48 77 aa11.27□□□□□ -0.61
TNFRSF1A-209ENST00000536717 C2orf82Q6UX34 121 aa11.27□□□□□ -0.61
TNFRSF1A-209ENST00000536717 UNQ6190/PRO20217Q6UXQ8 127 aa11.26□□□□□ -0.61
TNFRSF1A-209ENST00000536717 PKIGQ9Y2B9 76 aa11.25□□□□□ -0.61
TNFRSF1A-209ENST00000536717 TRBV30A0A0K0K1B3 111 aa11.25□□□□□ -0.61
TNFRSF1A-209ENST00000536717 RNF151Q2KHN1 245 aa11.25□□□□□ -0.61
TNFRSF1A-209ENST00000536717 C10orf25Q5T742 122 aa11.25□□□□□ -0.61
TNFRSF1A-209ENST00000536717 STPG4Q8N801 248 aa11.25□□□□□ -0.61
TNFRSF1A-209ENST00000536717 C6orf48Q9UBA6 75 aa11.24□□□□□ -0.61
TNFRSF1A-209ENST00000536717 SCGB1D1O95968 90 aa11.22□□□□□ -0.61
TNFRSF1A-209ENST00000536717 S100A12P80511 92 aa11.22□□□□□ -0.61
TNFRSF1A-209ENST00000536717 SFTA2Q6UW10 78 aa11.22□□□□□ -0.61
TNFRSF1A-209ENST00000536717 PLEKHB2Q96CS7 222 aa11.22□□□□□ -0.61
TNFRSF1A-209ENST00000536717 LINC00474Q9P2X8 69 aa11.22□□□□□ -0.61
TNFRSF1A-209ENST00000536717 LEPROTO15243 131 aa11.21□□□□□ -0.61
TNFRSF1A-209ENST00000536717 LOC107984640A0A0U1RRK4 108 aa11.2□□□□□ -0.62
TNFRSF1A-209ENST00000536717 OXTP01178 125 aa11.2□□□□□ -0.62
TNFRSF1A-209ENST00000536717 E9PLD3 99 aa11.19□□□□□ -0.62
TNFRSF1A-209ENST00000536717 PTTG1IPP53801 180 aa11.19□□□□□ -0.62
TNFRSF1A-209ENST00000536717 ATOH7Q8N100 152 aa11.19□□□□□ -0.62
TNFRSF1A-209ENST00000536717 C7orf33Q8WU49 177 aa11.19□□□□□ -0.62
TNFRSF1A-209ENST00000536717 J3QQQ9 107 aa11.18□□□□□ -0.62
TNFRSF1A-209ENST00000536717 LGALS3P17931 250 aaKnown RBP11.18□□□□□ -0.62
TNFRSF1A-209ENST00000536717 RPL18AQ02543 176 aaKnown RBP11.18□□□□□ -0.62
TNFRSF1A-209ENST00000536717 C9orf116Q5BN46 136 aaPredicted RBP11.18□□□□□ -0.62
TNFRSF1A-209ENST00000536717 TLX1NBP0CAT3 122 aa11.17□□□□□ -0.62
TNFRSF1A-209ENST00000536717 GAGE2BQ13066 116 aa11.17□□□□□ -0.62
TNFRSF1A-209ENST00000536717 ZNF625Q96I27 306 aaPredicted RBP11.17□□□□□ -0.62
TNFRSF1A-209ENST00000536717 NDUFA12Q9UI09 145 aa11.17□□□□□ -0.62
TNFRSF1A-209ENST00000536717 NDUFC2-KCTD14E9PQ53 114 aa11.16□□□□□ -0.62
TNFRSF1A-209ENST00000536717 MYMXA0A1B0GTQ4 84 aa11.15□□□□□ -0.62
TNFRSF1A-209ENST00000536717 TSPEAR-AS2P59090 65 aa11.15□□□□□ -0.62
TNFRSF1A-209ENST00000536717 NMUP48645 174 aa11.14□□□□□ -0.63
TNFRSF1A-209ENST00000536717 HERV-K104P63124 156 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms