RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 AP1S3Q96PC3 154 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 TXNDC17Q9BRA2 123 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 NOP10Q9NPE3 64 aaKnown RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 HIGD1AQ9Y241 93 aa1.48□□□□□ -2.17
SYNE1-232ENST00000535081 LSM5Q9Y4Y9 91 aaKnown RBP1.48□□□□□ -2.17
SYNE1-232ENST00000535081 A0A096LPF7 62 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 A0A0J9YX75 114 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 A0A1W2PNM2 257 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 DUXBA0A1W2PPF3 345 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 ZNF727A8MUV8 499 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 E7EUB6 86 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 FNDC10F2Z333 226 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM250H0YL14 139 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 I3L2K1 104 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 PITX3O75364 302 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 NDUFB6O95139 128 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 FAUP35544 74 aaKnown RBP1.47□□□□□ -2.17
SYNE1-232ENST00000535081 LPAR6P43657 344 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 HSPE1P61604 102 aaKnown RBP1.47□□□□□ -2.17
SYNE1-232ENST00000535081 GNG5P63218 68 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 SEC11AP67812 179 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 WT1-ASQ06250 92 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 PPP1R1AQ13522 171 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 MSMO1Q15800 293 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 PMCHL1Q16048 86 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 TAL2Q16559 108 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 SPINK13Q1W4C9 94 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 MEIG1Q5JSS6 88 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 BVES-AS1Q5T3Y7 98 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 LELP1Q5T871 98 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 DPPA3Q6W0C5 159 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 C1orf158Q8N1D5 194 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 TMEM229BQ8NBD8 167 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 OR10P1Q8NGE3 313 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 ATP6V0E2Q8NHE4 81 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 SMIM4Q8WVI0 70 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 ARHGAP5-AS1Q96IT6 56 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 C20orf166-AS1Q96NR2 134 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 SPANXDQ9BXN6 97 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 MRPL32Q9BYC8 188 aaKnown RBP1.47□□□□□ -2.17
SYNE1-232ENST00000535081 EIF5A2Q9GZV4 153 aaKnown RBP1.47□□□□□ -2.17
SYNE1-232ENST00000535081 ST20Q9HBF5 79 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 NDUFA4L2Q9NRX3 87 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 FAT1Q14517 4588 aa1.47□□□□□ -2.17
SYNE1-232ENST00000535081 TRAV8-3A0A0A6YYJ7 113 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV8-1A0A0A6YYK1 113 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV26-2A0A0B4J265 109 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 TRGV4A0A0C4DH28 118 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 CRYM-AS1A6NIL9 109 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 TMEM262E9PQX1 116 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 C17orf112F2Z3M2 114 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 F8W1H4 67 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 CCDC179H3BU77 68 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 COX7A2P2O60397 106 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 GPX1P07203 203 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 LINC00694P0DN24 101 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 SLC25A6P12236 298 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 FXYD4P59646 89 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 SUPT4H1P63272 117 aaKnown RBP1.46□□□□□ -2.18
SYNE1-232ENST00000535081 Q0VG73 95 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 C4orf26Q17RF5 130 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 C1orf195Q5TG92 126 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 GDF5OSQ5U4N7 250 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 Q6AWC8 147 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 RASL11AQ6T310 242 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 LYPD5Q6UWN5 251 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 LCN15Q6UWW0 184 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 Q6ZSA8 131 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 Q6ZUT4 128 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 GATD1Q8NB37 220 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 OR10AG1Q8NH19 301 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 OR51H1Q8NH63 302 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 AQP10Q96PS8 301 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 PMCHL2Q9BQD1 86 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 PRADC1Q9BSG0 188 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 NMES1Q9C002 83 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 PRO0255Q9UI72 69 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 KLF12Q9Y4X4 402 aa1.46□□□□□ -2.18
SYNE1-232ENST00000535081 LRP2P98164 4655 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 TRAV12-2A0A075B6T6 113 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 TRGV1A0A0A0MS02 117 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 MUC21A0A0G2JKD1 596 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 MUC21A0A140T8X8 626 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 A0A1W2PPM0 123 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 IBA57-AS1B1ANH7 110 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 ARL6IP5O75915 188 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 PPYP01298 95 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 MT-ATP8P03928 68 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 SRP19P09132 144 aaKnown RBP1.45□□□□□ -2.18
SYNE1-232ENST00000535081 FABP2P12104 132 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 IFITM1P13164 125 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 RPL30P62888 115 aaKnown RBP1.45□□□□□ -2.18
SYNE1-232ENST00000535081 SSBP1Q04837 148 aaKnown RBP1.45□□□□□ -2.18
SYNE1-232ENST00000535081 CD164Q04900 197 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 LINC01556Q5JQF7 62 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 Q6ZS49 121 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 GOLT1AQ6ZVE7 132 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 LYZL2Q7Z4W2 148 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 FAM19A1Q7Z5A9 133 aa1.45□□□□□ -2.18
SYNE1-232ENST00000535081 WFDC10BQ8IUB3 73 aa1.45□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms