RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 DPM2O94777 84 aa10.05□□□□□ -0.8
CHMP4A-207ENST00000533523 LINC00242Q5T6M2 205 aa10.05□□□□□ -0.8
CHMP4A-207ENST00000533523 CHCHD10Q8WYQ3 142 aaPredicted RBP10.05□□□□□ -0.8
CHMP4A-207ENST00000533523 TINCRA0A1B0GVN0 87 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 hDV102S1A0JD36 115 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 C11orf86A6NJI1 115 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 CCL25O15444 150 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 PLNP26678 52 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 JOSD1Q15040 202 aaPredicted RBP10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 FAM19A3Q7Z5A8 133 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 LPAP08519 4548 aa10.04□□□□□ -0.8
CHMP4A-207ENST00000533523 IGKCP01834 107 aa10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 SEC11AP67812 179 aa10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 COX6A2Q02221 97 aa10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 PYY3Q5JQD4 70 aa10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 SDIM1Q6ZPB5 146 aa10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 Q6ZRU5 148 aa10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 GEMIN7Q9H840 131 aaKnown RBP10.03□□□□□ -0.8
CHMP4A-207ENST00000533523 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.02□□□□□ -0.81
CHMP4A-207ENST00000533523 XCL1P47992 114 aa10.02□□□□□ -0.81
CHMP4A-207ENST00000533523 CNBPP62633 177 aaKnown RBP10.02□□□□□ -0.81
CHMP4A-207ENST00000533523 ATOH7Q8N100 152 aa10.02□□□□□ -0.81
CHMP4A-207ENST00000533523 IGHV3-64A0A075B6Q5 118 aa10.01□□□□□ -0.81
CHMP4A-207ENST00000533523 ZNF22P17026 224 aaPredicted RBP10.01□□□□□ -0.81
CHMP4A-207ENST00000533523 HERVK_113P63121 156 aa10.01□□□□□ -0.81
CHMP4A-207ENST00000533523 LINC00469Q8N7U9 141 aa10.01□□□□□ -0.81
CHMP4A-207ENST00000533523 DPH3Q96FX2 82 aa10.01□□□□□ -0.81
CHMP4A-207ENST00000533523 IGLV5-45A0A087WSX0 123 aa10□□□□□ -0.81
CHMP4A-207ENST00000533523 CHTF8P0CG12 524 aa10□□□□□ -0.81
CHMP4A-207ENST00000533523 CIRBPQ14011 172 aaKnown RBP10□□□□□ -0.81
CHMP4A-207ENST00000533523 CD164L2Q6UWJ8 174 aa10□□□□□ -0.81
CHMP4A-207ENST00000533523 IGHV3OR16-9A0A0B4J2B5 98 aa9.99□□□□□ -0.81
CHMP4A-207ENST00000533523 FOXI1Q12951 378 aa9.99□□□□□ -0.81
CHMP4A-207ENST00000533523 TMEM170BQ5T4T1 132 aa9.99□□□□□ -0.81
CHMP4A-207ENST00000533523 CDKN2A-AS1Q9UH64 79 aa9.99□□□□□ -0.81
CHMP4A-207ENST00000533523 C5orf38Q86SI9 138 aa9.98□□□□□ -0.81
CHMP4A-207ENST00000533523 C15orf56Q8N910 161 aa9.98□□□□□ -0.81
CHMP4A-207ENST00000533523 A0A087WYN8 130 aa9.97□□□□□ -0.81
CHMP4A-207ENST00000533523 H3BRM9 83 aa9.97□□□□□ -0.81
CHMP4A-207ENST00000533523 COX7A2LO14548 114 aa9.97□□□□□ -0.81
CHMP4A-207ENST00000533523 SPACA4Q8TDM5 124 aa9.97□□□□□ -0.81
CHMP4A-207ENST00000533523 GVQW2A0A096LPI5 108 aaPredicted RBP9.96□□□□□ -0.82
CHMP4A-207ENST00000533523 IGHV1-58A0A0C4DH39 117 aa9.96□□□□□ -0.82
CHMP4A-207ENST00000533523 SMIM6P0DI80 62 aa9.96□□□□□ -0.82
CHMP4A-207ENST00000533523 A0A087WZ39 114 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 TMEM223A0PJW6 202 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 SPINK8P0C7L1 97 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 MAJINQ3KP22 176 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 HIGD2BQ4VC39 106 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 STPG4Q8N801 248 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 C7orf33Q8WU49 177 aa9.95□□□□□ -0.82
CHMP4A-207ENST00000533523 HERVK_113P61574 105 aa9.94□□□□□ -0.82
CHMP4A-207ENST00000533523 LINC01561Q8N1V8 128 aa9.94□□□□□ -0.82
CHMP4A-207ENST00000533523 FAT4Q6V0I7 4981 aa9.94□□□□□ -0.82
CHMP4A-207ENST00000533523 SMIM1B2RUZ4 78 aa9.93□□□□□ -0.82
CHMP4A-207ENST00000533523 HSBP1L1C9JCN9 74 aa9.93□□□□□ -0.82
CHMP4A-207ENST00000533523 SLPIP03973 132 aa9.93□□□□□ -0.82
CHMP4A-207ENST00000533523 VAMP8Q9BV40 100 aa9.93□□□□□ -0.82
CHMP4A-207ENST00000533523 PKIGQ9Y2B9 76 aa9.93□□□□□ -0.82
CHMP4A-207ENST00000533523 MALP21145 153 aa9.92□□□□□ -0.82
CHMP4A-207ENST00000533523 ANKRD39Q53RE8 183 aa9.92□□□□□ -0.82
CHMP4A-207ENST00000533523 PLAC8Q9NZF1 115 aa9.92□□□□□ -0.82
CHMP4A-207ENST00000533523 IGKV2-24A0A0C4DH68 120 aa9.9□□□□□ -0.82
CHMP4A-207ENST00000533523 IGLV5-39A0A0G2JS06 123 aa9.9□□□□□ -0.82
CHMP4A-207ENST00000533523 E9PLD3 99 aa9.9□□□□□ -0.82
CHMP4A-207ENST00000533523 ZNF561-AS1K7EIQ3 104 aa9.9□□□□□ -0.82
CHMP4A-207ENST00000533523 PAM16Q9Y3D7 125 aa9.9□□□□□ -0.82
CHMP4A-207ENST00000533523 LEPROTO15243 131 aa9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 APOMO95445 188 aa9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 PRR3P79522 188 aaKnown RBP9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 SPATA45Q537H7 98 aa9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 ORAOV1Q8WV07 137 aa9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 PLEKHB2Q96CS7 222 aa9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 MUC2Q02817 5179 aa9.89□□□□□ -0.83
CHMP4A-207ENST00000533523 IGKV2D-26A0A0A0MRZ7 120 aa9.88□□□□□ -0.83
CHMP4A-207ENST00000533523 S100A12P80511 92 aa9.88□□□□□ -0.83
CHMP4A-207ENST00000533523 CARD19Q96LW7 228 aa9.88□□□□□ -0.83
CHMP4A-207ENST00000533523 C12orf57Q99622 126 aa9.88□□□□□ -0.83
CHMP4A-207ENST00000533523 NMUP48645 174 aa9.87□□□□□ -0.83
CHMP4A-207ENST00000533523 TSPEAR-AS2P59090 65 aa9.87□□□□□ -0.83
CHMP4A-207ENST00000533523 COX7B2Q8TF08 81 aa9.87□□□□□ -0.83
CHMP4A-207ENST00000533523 TOMM7Q9P0U1 55 aa9.87□□□□□ -0.83
CHMP4A-207ENST00000533523 J3QQQ9 107 aa9.86□□□□□ -0.83
CHMP4A-207ENST00000533523 SPAG11BQ08648 103 aa9.86□□□□□ -0.83
CHMP4A-207ENST00000533523 SYCNQ0VAF6 134 aa9.86□□□□□ -0.83
CHMP4A-207ENST00000533523 LINC00518Q8N0U6 118 aa9.86□□□□□ -0.83
CHMP4A-207ENST00000533523 LINC01600Q96MT4 127 aa9.86□□□□□ -0.83
CHMP4A-207ENST00000533523 PRSS2P07478 247 aa9.85□□□□□ -0.83
CHMP4A-207ENST00000533523 LGALS3P17931 250 aaKnown RBP9.85□□□□□ -0.83
CHMP4A-207ENST00000533523 KIAA0087Q14695 138 aa9.84□□□□□ -0.83
CHMP4A-207ENST00000533523 Q8IZM0 81 aa9.84□□□□□ -0.83
CHMP4A-207ENST00000533523 LINC00526Q96FQ7 95 aa9.84□□□□□ -0.83
CHMP4A-207ENST00000533523 C2orf48Q96LS8 159 aa9.84□□□□□ -0.83
CHMP4A-207ENST00000533523 LINC00474Q9P2X8 69 aa9.84□□□□□ -0.83
CHMP4A-207ENST00000533523 A0A096LNI7 61 aa9.83□□□□□ -0.84
CHMP4A-207ENST00000533523 C6orf226Q5I0X4 101 aa9.83□□□□□ -0.84
CHMP4A-207ENST00000533523 PCP2Q8IVA1 136 aa9.83□□□□□ -0.84
CHMP4A-207ENST00000533523 CAMK2N2Q96S95 79 aa9.83□□□□□ -0.84
CHMP4A-207ENST00000533523 TTTY13Q9BZ97 58 aa9.83□□□□□ -0.84
CHMP4A-207ENST00000533523 KRTAP9-2Q9BYQ4 174 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms