RNA–Protein interactions for RNA: ENST00000533064.1

TRIM3-212, Transcript of tripartite motif containing 3, humanhuman

TSL 1 (best)

Gene TRIM3, Length 1,654 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-212ENST00000533064 C1orf134Q5TEV5 83 aa9.47□□□□□ -0.89
TRIM3-212ENST00000533064 KRTAP26-1Q6PEX3 210 aa9.47□□□□□ -0.89
TRIM3-212ENST00000533064 ORAOV1Q8WV07 137 aa9.47□□□□□ -0.89
TRIM3-212ENST00000533064 NDUFA12Q9UI09 145 aa9.47□□□□□ -0.89
TRIM3-212ENST00000533064 CFAP161Q6P656 301 aa9.46□□□□□ -0.89
TRIM3-212ENST00000533064 HIST1H4GQ99525 98 aa9.46□□□□□ -0.89
TRIM3-212ENST00000533064 CEND1Q8N111 149 aa9.45□□□□□ -0.9
TRIM3-212ENST00000533064 SPANXB1Q9NS25 103 aaPredicted RBP9.45□□□□□ -0.9
TRIM3-212ENST00000533064 NDUFA1O15239 70 aa9.45□□□□□ -0.9
TRIM3-212ENST00000533064 GCSHP23434 173 aa9.45□□□□□ -0.9
TRIM3-212ENST00000533064 A0A0J9YXY3 114 aa9.44□□□□□ -0.9
TRIM3-212ENST00000533064 DNAH10Q8IVF4 4471 aa9.43□□□□□ -0.9
TRIM3-212ENST00000533064 A6NDN8 102 aa9.43□□□□□ -0.9
TRIM3-212ENST00000533064 PRSS2P07478 247 aa9.43□□□□□ -0.9
TRIM3-212ENST00000533064 SRSF9Q13242 221 aaKnown RBP eCLIP9.43□□□□□ -0.9
TRIM3-212ENST00000533064 TOMM7Q9P0U1 55 aa9.43□□□□□ -0.9
TRIM3-212ENST00000533064 TMEM238C9JI98 176 aa9.42□□□□□ -0.9
TRIM3-212ENST00000533064 FXYD2P54710 66 aa9.42□□□□□ -0.9
TRIM3-212ENST00000533064 COX7B2Q8TF08 81 aa9.42□□□□□ -0.9
TRIM3-212ENST00000533064 SACSQ9NZJ4 4579 aa9.42□□□□□ -0.9
TRIM3-212ENST00000533064 Q6ZRN7 208 aaPredicted RBP9.42□□□□□ -0.9
TRIM3-212ENST00000533064 HYDINQ4G0P3 5121 aa9.41□□□□□ -0.9
TRIM3-212ENST00000533064 USP17L23D6RBM5 183 aa9.41□□□□□ -0.9
TRIM3-212ENST00000533064 ZNF561-AS1K7EIQ3 104 aa9.41□□□□□ -0.9
TRIM3-212ENST00000533064 PTTG1IPP53801 180 aa9.41□□□□□ -0.9
TRIM3-212ENST00000533064 C6orf226Q5I0X4 101 aa9.41□□□□□ -0.9
TRIM3-212ENST00000533064 ZNF625Q96I27 306 aaPredicted RBP9.41□□□□□ -0.9
TRIM3-212ENST00000533064 TIMM17BO60830 172 aa9.4□□□□□ -0.9
TRIM3-212ENST00000533064 HERV-K104P63124 156 aa9.4□□□□□ -0.9
TRIM3-212ENST00000533064 SPAG11BQ08648 103 aa9.4□□□□□ -0.9
TRIM3-212ENST00000533064 C14orf177Q52M58 125 aa9.4□□□□□ -0.9
TRIM3-212ENST00000533064 Q8IZM0 81 aa9.4□□□□□ -0.9
TRIM3-212ENST00000533064 C15orf56Q8N910 161 aa9.39□□□□□ -0.91
TRIM3-212ENST00000533064 LITAFQ99732 161 aa9.39□□□□□ -0.91
TRIM3-212ENST00000533064 LECT2O14960 151 aa9.39□□□□□ -0.91
TRIM3-212ENST00000533064 HIGD2BQ4VC39 106 aa9.39□□□□□ -0.91
TRIM3-212ENST00000533064 GVQW2A0A096LPI5 108 aaPredicted RBP9.38□□□□□ -0.91
TRIM3-212ENST00000533064 A6NJY4 79 aa9.38□□□□□ -0.91
TRIM3-212ENST00000533064 CKS1BP61024 79 aa9.38□□□□□ -0.91
TRIM3-212ENST00000533064 SFTA2Q6UW10 78 aa9.38□□□□□ -0.91
TRIM3-212ENST00000533064 Q6ZVH6 145 aa9.38□□□□□ -0.91
TRIM3-212ENST00000533064 SPANXDQ9BXN6 97 aa9.38□□□□□ -0.91
TRIM3-212ENST00000533064 SPANXCQ9NY87 97 aa9.38□□□□□ -0.91
TRIM3-212ENST00000533064 TAX1BP3O14907 124 aa9.37□□□□□ -0.91
TRIM3-212ENST00000533064 CXCL5P42830 114 aa9.37□□□□□ -0.91
TRIM3-212ENST00000533064 CIRBPQ14011 172 aaKnown RBP9.37□□□□□ -0.91
TRIM3-212ENST00000533064 FRAS1Q86XX4 4008 aa9.37□□□□□ -0.91
TRIM3-212ENST00000533064 DNAH2Q9P225 4427 aa9.37□□□□□ -0.91
TRIM3-212ENST00000533064 SMIM13P0DJ93 91 aa9.36□□□□□ -0.91
TRIM3-212ENST00000533064 NHP2Q9NX24 153 aaKnown RBP9.36□□□□□ -0.91
TRIM3-212ENST00000533064 KIAA0087Q14695 138 aa9.36□□□□□ -0.91
TRIM3-212ENST00000533064 ADAMTSL4-AS1Q5T5F5 129 aa9.36□□□□□ -0.91
TRIM3-212ENST00000533064 C2orf48Q96LS8 159 aa9.36□□□□□ -0.91
TRIM3-212ENST00000533064 A0A1B0GWB2 263 aa9.35□□□□□ -0.91
TRIM3-212ENST00000533064 LRCOL1A6NCL2 159 aa9.35□□□□□ -0.91
TRIM3-212ENST00000533064 F8WDY8 70 aa9.35□□□□□ -0.91
TRIM3-212ENST00000533064 LINC00526Q96FQ7 95 aa9.35□□□□□ -0.91
TRIM3-212ENST00000533064 CAMK2N2Q96S95 79 aa9.35□□□□□ -0.91
TRIM3-212ENST00000533064 RPL24P83731 157 aaKnown RBP9.34□□□□□ -0.91
TRIM3-212ENST00000533064 WFDC2Q14508 124 aa9.34□□□□□ -0.91
TRIM3-212ENST00000533064 MEIG1Q5JSS6 88 aa9.34□□□□□ -0.91
TRIM3-212ENST00000533064 MUSTN1Q8IVN3 82 aa9.34□□□□□ -0.91
TRIM3-212ENST00000533064 NTN5Q8WTR8 489 aaPredicted RBP9.34□□□□□ -0.91
TRIM3-212ENST00000533064 KMT2CQ8NEZ4 4911 aaKnown RBP9.33□□□□□ -0.92
TRIM3-212ENST00000533064 RTL8CO15255 209 aa9.33□□□□□ -0.92
TRIM3-212ENST00000533064 IFITM1P13164 125 aa9.33□□□□□ -0.92
TRIM3-212ENST00000533064 C2orf82Q6UX34 121 aa9.33□□□□□ -0.92
TRIM3-212ENST00000533064 A0A087WTM6 91 aa9.32□□□□□ -0.92
TRIM3-212ENST00000533064 K7ERJ3 54 aa9.32□□□□□ -0.92
TRIM3-212ENST00000533064 SYCNQ0VAF6 134 aa9.32□□□□□ -0.92
TRIM3-212ENST00000533064 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.31□□□□□ -0.92
TRIM3-212ENST00000533064 C9orf118A6NHY6 69 aa9.31□□□□□ -0.92
TRIM3-212ENST00000533064 Q8N814 137 aa9.31□□□□□ -0.92
TRIM3-212ENST00000533064 COPS9Q8WXC6 57 aa9.31□□□□□ -0.92
TRIM3-212ENST00000533064 RAB37Q96AX2 223 aa9.31□□□□□ -0.92
TRIM3-212ENST00000533064 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.3□□□□□ -0.92
TRIM3-212ENST00000533064 A4D1N5 150 aa9.3□□□□□ -0.92
TRIM3-212ENST00000533064 TNP2Q05952 138 aa9.3□□□□□ -0.92
TRIM3-212ENST00000533064 UNQ6190/PRO20217Q6UXQ8 127 aa9.3□□□□□ -0.92
TRIM3-212ENST00000533064 CARD19Q96LW7 228 aa9.3□□□□□ -0.92
TRIM3-212ENST00000533064 DNAH17Q9UFH2 4485 aa9.3□□□□□ -0.92
TRIM3-212ENST00000533064 TRBV30A0A0K0K1B3 111 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 DAND5Q8N907 189 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 PPDPFQ9H3Y8 114 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 A0A0U1RRA0 63 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 CFC1BP0CG36 223 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 CFC1P0CG37 223 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 Q6ZRU5 148 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 LINC00336Q6ZUF6 198 aa9.29□□□□□ -0.92
TRIM3-212ENST00000533064 CNBPP62633 177 aaKnown RBP9.28□□□□□ -0.92
TRIM3-212ENST00000533064 C10orf25Q5T742 122 aa9.28□□□□□ -0.92
TRIM3-212ENST00000533064 LINC00308Q8TCZ7 52 aa9.28□□□□□ -0.92
TRIM3-212ENST00000533064 ERG28Q9UKR5 140 aa9.28□□□□□ -0.92
TRIM3-212ENST00000533064 RYR2Q92736 4967 aa9.28□□□□□ -0.92
TRIM3-212ENST00000533064 NPC2P61916 151 aa9.27□□□□□ -0.93
TRIM3-212ENST00000533064 A0A0B4J2C4 111 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 H3BUT2 72 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 LINC00158P58513 81 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 RNF151Q2KHN1 245 aa9.26□□□□□ -0.93
TRIM3-212ENST00000533064 MIR7-3HGQ8N6C7 128 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms