RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 MT4P47944 62 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 PIGPP57054 158 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 RPS20P60866 119 aaKnown RBP1.54□□□□□ -2.16
CD44-235ENST00000532339 RANP62826 216 aaKnown RBP1.54□□□□□ -2.16
CD44-235ENST00000532339 XAF1Q6GPH4 301 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 LHFPL1Q86WI0 220 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 OR2T35Q8NGX2 323 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 TRGV9Q99603 122 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 PRO2289Q9P1D8 64 aa1.54□□□□□ -2.16
CD44-235ENST00000532339 A0A0G2JQZ4 141 aa1.53□□□□□ -2.16
CD44-235ENST00000532339 HIST1H1DP16402 221 aaKnown RBP1.53□□□□□ -2.16
CD44-235ENST00000532339 FXYD4P59646 89 aa1.53□□□□□ -2.16
CD44-235ENST00000532339 RPL37P61927 97 aaKnown RBP1.53□□□□□ -2.16
CD44-235ENST00000532339 RPS29P62273 56 aaKnown RBP1.53□□□□□ -2.16
CD44-235ENST00000532339 SURF2Q15527 256 aaPredicted RBP1.53□□□□□ -2.16
CD44-235ENST00000532339 Q8NDZ9 215 aa1.53□□□□□ -2.16
CD44-235ENST00000532339 AGPAT4-IT1Q9H0P7 198 aa1.53□□□□□ -2.16
CD44-235ENST00000532339 NPVFQ9HCQ7 196 aa1.53□□□□□ -2.16
CD44-235ENST00000532339 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.53□□□□□ -2.16
CD44-235ENST00000532339 NDUFB11Q9NX14 153 aa1.53□□□□□ -2.16
CD44-235ENST00000532339 SRP19P09132 144 aaKnown RBP1.52□□□□□ -2.17
CD44-235ENST00000532339 COX4I1P13073 169 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 UBE2D2P62837 147 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 RPS25P62851 125 aaKnown RBP1.52□□□□□ -2.17
CD44-235ENST00000532339 NMSQ5H8A3 153 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 S100A7AQ86SG5 101 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 IMMP2LQ96T52 175 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 EFCAB1Q9HAE3 211 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 SAR1AQ9NR31 198 aa1.52□□□□□ -2.17
CD44-235ENST00000532339 RSL24D1Q9UHA3 163 aaKnown RBP1.52□□□□□ -2.17
CD44-235ENST00000532339 TRBV7-3A0A075B6L6 115 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 IGHV1-58A0A0C4DH39 117 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 TRBV10-1A0A0K0K1A3 114 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 C9orf92A6NGG3 77 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 A8MWV9 139 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 GNGT2O14610 69 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 LEPROTO15243 131 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 BCE1O60756 84 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 CSN1S1P47710 185 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 AP3S2P59780 193 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 AKR1C1Q04828 323 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 WHAMMP3Q1A5X7 153 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 TMEM78Q5T7P6 136 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 Q6AWC8 147 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 KRTAP8-1Q8IUC2 63 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 XAGE1AQ9HD64 81 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 COMMD3Q9UBI1 195 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 HIGD1AQ9Y241 93 aa1.51□□□□□ -2.17
CD44-235ENST00000532339 A0A0G2JND7 137 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 H3BT86 120 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 M0R3E3 92 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 HYPMO75409 117 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 IGKV1-5P01602 117 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 IGLC2P0DOY2 106 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 TMEM97Q5BJF2 176 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 LYZL1Q6UWQ5 148 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 SREK1IP1Q8N9Q2 155 aaPredicted RBP1.5□□□□□ -2.17
CD44-235ENST00000532339 NUP35Q8NFH5 326 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 VCX3BQ9H321 246 aa1.5□□□□□ -2.17
CD44-235ENST00000532339 TRBV20OR9-2A0A075B6H5 130 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 TRBV25-1A0A075B6N4 114 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 TMSB15BA0A087X1C1 80 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 S100GP29377 79 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 HINT1P49773 126 aaPredicted RBP1.49□□□□□ -2.17
CD44-235ENST00000532339 RAB14P61106 215 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 LPCAT3Q6P1A2 487 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 BPIFA4PQ86YQ2 179 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 AQP10Q96PS8 301 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 WDR61Q9GZS3 305 aaKnown RBP1.49□□□□□ -2.17
CD44-235ENST00000532339 U3KQ87 197 aa1.49□□□□□ -2.17
CD44-235ENST00000532339 TRBV20-1A0A075B6N2 111 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 TRAV7A0A075B6U4 112 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 IGKV2-40A0A087WW87 121 aaPredicted RBP1.48□□□□□ -2.17
CD44-235ENST00000532339 CEBPZOSA8MTT3 80 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 H3BQ15 152 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 IGKV2D-40P01614 121 aaPredicted RBP1.48□□□□□ -2.17
CD44-235ENST00000532339 KRTAP12-1P59990 96 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 S100A10P60903 97 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 CCL20P78556 96 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 KRTAP13-4Q3LI77 160 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 RNASE11Q8TAA1 199 aaKnown RBP1.48□□□□□ -2.17
CD44-235ENST00000532339 TIMM21Q9BVV7 248 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 NAA60Q9H7X0 242 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 IL36BQ9NZH7 164 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 NAT8Q9UHE5 227 aa1.48□□□□□ -2.17
CD44-235ENST00000532339 TRAV21A0A0B4J279 112 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 FAM236DA0A1B0GTK5 79 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 H7C2G1 150 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 J3QQQ9 107 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 IL5P05113 134 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 FAM236CP0DP71 79 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 GNG2P59768 71 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 IQCJQ1A5X6 159 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 DERL1Q9BUN8 251 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 CCDC90BQ9GZT6 254 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 OR5AC2Q9NZP5 309 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 CACFD1Q9UGQ2 172 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 TIMM9Q9Y5J7 89 aa1.47□□□□□ -2.17
CD44-235ENST00000532339 FXYD6-FXYD2A0A087WZ82 144 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 IGHV1-24A0A0C4DH33 117 aa1.46□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms