RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 LINC00173Q6ZV60 143 aa8.68□□□□□ -1.02
CPSF1-201ENST00000526271 VCX2Q9H322 139 aa8.68□□□□□ -1.02
CPSF1-201ENST00000526271 IGLV4-69A0A075B6H9 119 aa8.67□□□□□ -1.02
CPSF1-201ENST00000526271 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.67□□□□□ -1.02
CPSF1-201ENST00000526271 GAGE2BQ13066 116 aa8.67□□□□□ -1.02
CPSF1-201ENST00000526271 PAPPA-AS1Q5QFB9 102 aa8.67□□□□□ -1.02
CPSF1-201ENST00000526271 CD164L2Q6UWJ8 174 aa8.67□□□□□ -1.02
CPSF1-201ENST00000526271 TEX43Q6ZNM6 134 aa8.67□□□□□ -1.02
CPSF1-201ENST00000526271 ZNF561-AS1K7EIQ3 104 aa8.66□□□□□ -1.02
CPSF1-201ENST00000526271 ATP5LO75964 103 aa8.66□□□□□ -1.02
CPSF1-201ENST00000526271 ZC2HC1BQ5TFG8 222 aa8.66□□□□□ -1.02
CPSF1-201ENST00000526271 Q6ZN92 141 aa8.66□□□□□ -1.02
CPSF1-201ENST00000526271 PHF5AQ7RTV0 110 aaKnown RBP8.66□□□□□ -1.02
CPSF1-201ENST00000526271 PRR26Q8N8Z3 221 aa8.66□□□□□ -1.02
CPSF1-201ENST00000526271 MALP21145 153 aa8.65□□□□□ -1.02
CPSF1-201ENST00000526271 C9orf116Q5BN46 136 aaPredicted RBP8.65□□□□□ -1.02
CPSF1-201ENST00000526271 FAM19A3Q7Z5A8 133 aa8.65□□□□□ -1.02
CPSF1-201ENST00000526271 KRTAP7-1Q8IUC3 87 aa8.65□□□□□ -1.02
CPSF1-201ENST00000526271 CST9LQ9H4G1 147 aa8.65□□□□□ -1.02
CPSF1-201ENST00000526271 TRAV13-1A0A0B4J241 112 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 IFITM10A6NMD0 228 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 LEPROTL1O95214 131 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 UBE2D1P51668 147 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 PMVKQ15126 192 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 IFI27L1Q96BM0 104 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 PACRGQ96M98 296 aaPredicted RBP8.64□□□□□ -1.03
CPSF1-201ENST00000526271 C2orf88Q9BSF0 95 aa8.64□□□□□ -1.03
CPSF1-201ENST00000526271 LOC107984640A0A0U1RRK4 108 aa8.63□□□□□ -1.03
CPSF1-201ENST00000526271 KRTAP1-4P0C5Y4 121 aa8.63□□□□□ -1.03
CPSF1-201ENST00000526271 COX7A2LO14548 114 aa8.62□□□□□ -1.03
CPSF1-201ENST00000526271 LINC00242Q5T6M2 205 aa8.62□□□□□ -1.03
CPSF1-201ENST00000526271 HSPB8Q9UJY1 196 aa8.62□□□□□ -1.03
CPSF1-201ENST00000526271 TRAV12-1A0A0B4J245 112 aa8.61□□□□□ -1.03
CPSF1-201ENST00000526271 FAM168BA1KXE4 195 aa8.61□□□□□ -1.03
CPSF1-201ENST00000526271 C5orf52A6NGY3 159 aa8.61□□□□□ -1.03
CPSF1-201ENST00000526271 S100A6P06703 90 aa8.61□□□□□ -1.03
CPSF1-201ENST00000526271 FABP4P15090 132 aa8.61□□□□□ -1.03
CPSF1-201ENST00000526271 HIST3H2BBQ8N257 126 aa8.61□□□□□ -1.03
CPSF1-201ENST00000526271 IGHV3OR16-9A0A0B4J2B5 98 aa8.6□□□□□ -1.03
CPSF1-201ENST00000526271 APOMO95445 188 aa8.6□□□□□ -1.03
CPSF1-201ENST00000526271 SNRPEP62304 92 aaKnown RBP8.6□□□□□ -1.03
CPSF1-201ENST00000526271 C1orf137Q5JT78 98 aa8.6□□□□□ -1.03
CPSF1-201ENST00000526271 FAT4Q6V0I7 4981 aa8.6□□□□□ -1.03
CPSF1-201ENST00000526271 TINCRA0A1B0GVN0 87 aa8.59□□□□□ -1.03
CPSF1-201ENST00000526271 SEC11AP67812 179 aa8.59□□□□□ -1.03
CPSF1-201ENST00000526271 C10orf25Q5T742 122 aa8.59□□□□□ -1.03
CPSF1-201ENST00000526271 C5orf38Q86SI9 138 aa8.59□□□□□ -1.03
CPSF1-201ENST00000526271 IGLV7-43P04211 117 aa8.58□□□□□ -1.04
CPSF1-201ENST00000526271 C2orf48Q96LS8 159 aa8.58□□□□□ -1.04
CPSF1-201ENST00000526271 CAMK2N2Q96S95 79 aa8.58□□□□□ -1.04
CPSF1-201ENST00000526271 KRTAP9-2Q9BYQ4 174 aa8.58□□□□□ -1.04
CPSF1-201ENST00000526271 IGLC3P0DOY3 106 aa8.57□□□□□ -1.04
CPSF1-201ENST00000526271 HERVK_113P63121 156 aa8.57□□□□□ -1.04
CPSF1-201ENST00000526271 RPL18AQ02543 176 aaKnown RBP8.57□□□□□ -1.04
CPSF1-201ENST00000526271 MAP1LC3CQ9BXW4 147 aa8.57□□□□□ -1.04
CPSF1-201ENST00000526271 IGLV5-45A0A087WSX0 123 aa8.56□□□□□ -1.04
CPSF1-201ENST00000526271 A0A087WZ39 114 aa8.56□□□□□ -1.04
CPSF1-201ENST00000526271 LINC01561Q8N1V8 128 aa8.56□□□□□ -1.04
CPSF1-201ENST00000526271 HIST1H2BLQ99880 126 aa8.56□□□□□ -1.04
CPSF1-201ENST00000526271 CHTOPQ9Y3Y2 248 aaKnown RBP8.56□□□□□ -1.04
CPSF1-201ENST00000526271 F8VRH5 84 aa8.55□□□□□ -1.04
CPSF1-201ENST00000526271 H0Y9J4 135 aa8.55□□□□□ -1.04
CPSF1-201ENST00000526271 SYS1-DBNDD2H3BUS1 97 aa8.55□□□□□ -1.04
CPSF1-201ENST00000526271 S100A2P29034 98 aa8.55□□□□□ -1.04
CPSF1-201ENST00000526271 GEMIN7Q9H840 131 aaKnown RBP8.55□□□□□ -1.04
CPSF1-201ENST00000526271 MRPL35Q9NZE8 188 aaKnown RBP8.55□□□□□ -1.04
CPSF1-201ENST00000526271 C3orf79P0CE67 100 aa8.54□□□□□ -1.04
CPSF1-201ENST00000526271 SPAG11BQ08648 103 aa8.54□□□□□ -1.04
CPSF1-201ENST00000526271 PET117Q6UWS5 81 aa8.54□□□□□ -1.04
CPSF1-201ENST00000526271 OR10D4PQ8NGN7 298 aa8.54□□□□□ -1.04
CPSF1-201ENST00000526271 C6orf48Q9UBA6 75 aa8.54□□□□□ -1.04
CPSF1-201ENST00000526271 CDKN2A-AS1Q9UH64 79 aa8.54□□□□□ -1.04
CPSF1-201ENST00000526271 MUC17Q685J3 4493 aa8.53□□□□□ -1.04
CPSF1-201ENST00000526271 C11orf86A6NJI1 115 aa8.53□□□□□ -1.04
CPSF1-201ENST00000526271 RNF151Q2KHN1 245 aa8.53□□□□□ -1.04
CPSF1-201ENST00000526271 LCE2AQ5TA79 106 aaPredicted RBP8.53□□□□□ -1.04
CPSF1-201ENST00000526271 F8WDY8 70 aa8.52□□□□□ -1.05
CPSF1-201ENST00000526271 H0Y8G0 127 aa8.52□□□□□ -1.05
CPSF1-201ENST00000526271 ZNF22P17026 224 aaPredicted RBP8.52□□□□□ -1.05
CPSF1-201ENST00000526271 LINC01545Q5VT33 79 aa8.52□□□□□ -1.05
CPSF1-201ENST00000526271 UNQ6190/PRO20217Q6UXQ8 127 aa8.52□□□□□ -1.05
CPSF1-201ENST00000526271 LINC00469Q8N7U9 141 aa8.52□□□□□ -1.05
CPSF1-201ENST00000526271 DIRC1Q969H9 104 aa8.52□□□□□ -1.05
CPSF1-201ENST00000526271 TMA7Q9Y2S6 64 aaKnown RBP8.52□□□□□ -1.05
CPSF1-201ENST00000526271 TLX1NBP0CAT3 122 aa8.51□□□□□ -1.05
CPSF1-201ENST00000526271 KIAA0087Q14695 138 aa8.51□□□□□ -1.05
CPSF1-201ENST00000526271 KRTDAPP60985 99 aa8.5□□□□□ -1.05
CPSF1-201ENST00000526271 ORAOV1Q8WV07 137 aa8.5□□□□□ -1.05
CPSF1-201ENST00000526271 IGLV1-50A0A075B6I6 118 aa8.49□□□□□ -1.05
CPSF1-201ENST00000526271 H3BRM9 83 aa8.49□□□□□ -1.05
CPSF1-201ENST00000526271 NDUFA1O15239 70 aa8.49□□□□□ -1.05
CPSF1-201ENST00000526271 DPM2O94777 84 aa8.49□□□□□ -1.05
CPSF1-201ENST00000526271 PLNP26678 52 aa8.49□□□□□ -1.05
CPSF1-201ENST00000526271 FAM19A5Q7Z5A7 132 aaPredicted RBP8.49□□□□□ -1.05
CPSF1-201ENST00000526271 PMCHL2Q9BQD1 86 aa8.49□□□□□ -1.05
CPSF1-201ENST00000526271 TMEM223A0PJW6 202 aa8.48□□□□□ -1.05
CPSF1-201ENST00000526271 SMIM1B2RUZ4 78 aa8.48□□□□□ -1.05
CPSF1-201ENST00000526271 IGKCP01834 107 aa8.48□□□□□ -1.05
CPSF1-201ENST00000526271 C9orf129Q5T035 196 aaKnown RBP8.48□□□□□ -1.05
CPSF1-201ENST00000526271 TMEM170BQ5T4T1 132 aa8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms