RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 I3L3M4 83 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 M0R1W7 72 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 DNAL4O96015 105 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 IGLV3-19P01714 112 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 COX6B1P14854 86 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 KPRPQ5T749 579 aaPredicted RBP1.34□□□□□ -2.19
CD44-216ENST00000525293 HCP5Q6MZN7 132 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 ZNF833PQ6ZTB9 187 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 SPANXA2-OT1Q8N9U9 137 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 OBSCN-AS1Q96MR7 158 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 RNF5Q99942 180 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 HIGD2AQ9BW72 106 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 ZNRD1Q9P1U0 126 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 LINC01558Q9Y6Z2 57 aa1.34□□□□□ -2.19
CD44-216ENST00000525293 LY75O60449 1722 aa1.34□□□□□ -2.2
CD44-216ENST00000525293 DOT1LQ8TEK3 1739 aa1.34□□□□□ -2.2
CD44-216ENST00000525293 PCDH15Q96QU1 1955 aa1.34□□□□□ -2.2
CD44-216ENST00000525293 TET2Q6N021 2002 aaPredicted RBP1.33□□□□□ -2.2
CD44-216ENST00000525293 NRXN3Q9Y4C0 1643 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 NINQ8N4C6 2090 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 LRRK2Q5S007 2527 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 RREB1Q92766 1687 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 C2CD3Q4AC94 2353 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 QSER1Q2KHR3 1735 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 TRAV12-1A0A0B4J245 112 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 A0A0J9YX75 114 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 TRBV10-1A0A0K0K1A3 114 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 A0A1B0GUT8 65 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 NUPR2A6NF83 97 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 IGIPA6NJ69 53 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 ARL14EPLP0DKL9 152 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 ZNF137PP52743 207 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 ELOF1P60002 83 aaKnown RBP1.33□□□□□ -2.2
CD44-216ENST00000525293 C1orf137Q5JT78 98 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 Q9BRP9 147 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 LENEPQ9Y5L5 61 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 LAMA4Q16363 1823 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 BRWD3Q6RI45 1802 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 PCNX2A6NKB5 2137 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 EYSQ5T1H1 3165 aa1.33□□□□□ -2.2
CD44-216ENST00000525293 COL4A1P02462 1669 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 NHSQ6T4R5 1651 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 DDX60LQ5H9U9 1706 aaKnown RBP1.32□□□□□ -2.2
CD44-216ENST00000525293 COL11A1P12107 1806 aaPredicted RBP1.32□□□□□ -2.2
CD44-216ENST00000525293 A0A1B0GU33 70 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 LINC01546A6NGU7 62 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 HIGD1CA8MV81 97 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 F8VRH5 84 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 NDUFA3O95167 84 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 IGHV3-53P01767 116 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 CTSGP08311 255 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 RNASE3P12724 160 aaKnown RBP1.32□□□□□ -2.2
CD44-216ENST00000525293 CNBPP62633 177 aaKnown RBP1.32□□□□□ -2.2
CD44-216ENST00000525293 ERHP84090 104 aaKnown RBP1.32□□□□□ -2.2
CD44-216ENST00000525293 FAM74A4Q5TZK3 123 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 Q5W150 140 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 ZCCHC13Q8WW36 166 aaKnown RBP1.32□□□□□ -2.2
CD44-216ENST00000525293 NBEAL2Q6ZNJ1 2754 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 NHSL1Q5SYE7 1610 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 MYO9AB2RTY4 2548 aa1.32□□□□□ -2.2
CD44-216ENST00000525293 MUC4Q99102 2169 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 DUOX1Q9NRD9 1551 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 IGHV3-64A0A075B6Q5 118 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 IGKV3OR2-268A0A0C4DH90 116 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 LCE6AA0A183 80 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 PRB1P04280 392 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 PLNP26678 52 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 SPANXN5Q5MJ07 72 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 COX7B2Q8TF08 81 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 LINC00208Q96KT6 92 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 TMEM14CQ9P0S9 112 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 KLK9Q9UKQ9 250 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 TMEM14AQ9Y6G1 99 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 SCN7AQ01118 1682 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 TIAM2Q8IVF5 1701 aa1.31□□□□□ -2.2
CD44-216ENST00000525293 PARP4Q9UKK3 1724 aaKnown RBP1.31□□□□□ -2.2
CD44-216ENST00000525293 ZFHX2Q9C0A1 2572 aaPredicted RBP1.31□□□□□ -2.2
CD44-216ENST00000525293 DOCK11Q5JSL3 2073 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 MYOFQ9NZM1 2061 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 SHPRHQ149N8 1683 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 SVILO95425 2214 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 ZNF292O60281 2723 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 DLEC1Q9Y238 1755 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 LINC00959A0A1B0GUT2 108 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 IGLV7-43P04211 117 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 CCL3L1P16619 93 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 CCL18P55774 89 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 DEFB116Q30KQ4 102 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 C10orf113Q5VZT2 155 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 LINC00322Q6ZN03 302 aaPredicted RBP1.3□□□□□ -2.2
CD44-216ENST00000525293 UBALD1Q8TB05 177 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 DMAC1Q96GE9 116 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 AMELXQ99217 191 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 TTTY10Q9BZA0 68 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 UBL5Q9BZL1 73 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 SCN3AQ9NY46 2000 aa1.3□□□□□ -2.2
CD44-216ENST00000525293 SPG11Q96JI7 2443 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 IGLV4-69A0A075B6H9 119 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 IGLV4-60A0A075B6I1 120 aa1.29□□□□□ -2.2
CD44-216ENST00000525293 A0A087WTM6 91 aa1.29□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms