RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 HEPN1Q6WQI6 88 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 CCL19Q99731 98 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 C20orf78Q9BR46 151 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 MED13Q9UHV7 2174 aa2.43□□□□□ -2.02
USP47-204ENST00000525078 KLKP1Q107X0 134 aa2.42□□□□□ -2.02
USP47-204ENST00000525078 TMEM170BQ5T4T1 132 aa2.42□□□□□ -2.02
USP47-204ENST00000525078 Q5VV11 94 aa2.42□□□□□ -2.02
USP47-204ENST00000525078 NXT2Q9NPJ8 142 aaKnown RBP2.42□□□□□ -2.02
USP47-204ENST00000525078 R4GMQ9 66 aa2.42□□□□□ -2.02
USP47-204ENST00000525078 IGKV2D-29A0A075B6S2 120 aaPredicted RBP2.41□□□□□ -2.02
USP47-204ENST00000525078 C7orf77A4D0Y5 90 aa2.41□□□□□ -2.02
USP47-204ENST00000525078 SYS1-DBNDD2H3BUS1 97 aa2.41□□□□□ -2.02
USP47-204ENST00000525078 Q9Y3F1 56 aa2.41□□□□□ -2.02
USP47-204ENST00000525078 ABCA4P78363 2273 aa2.41□□□□□ -2.02
USP47-204ENST00000525078 SPTBP11277 2137 aa2.41□□□□□ -2.02
USP47-204ENST00000525078 UMAD1C9J7I0 102 aa2.4□□□□□ -2.03
USP47-204ENST00000525078 PIN1P1O15428 100 aa2.4□□□□□ -2.03
USP47-204ENST00000525078 FXYD6P3P58550 94 aa2.4□□□□□ -2.03
USP47-204ENST00000525078 KRTAP12-1P59990 96 aa2.4□□□□□ -2.03
USP47-204ENST00000525078 KRTAP10-10P60014 251 aa2.4□□□□□ -2.03
USP47-204ENST00000525078 SMIM5Q71RC9 77 aa2.4□□□□□ -2.03
USP47-204ENST00000525078 MED12Q93074 2177 aa2.39□□□□□ -2.03
USP47-204ENST00000525078 NCR3O14931 201 aa2.39□□□□□ -2.03
USP47-204ENST00000525078 SPINT3P49223 89 aa2.39□□□□□ -2.03
USP47-204ENST00000525078 ZCCHC13Q8WW36 166 aaKnown RBP2.39□□□□□ -2.03
USP47-204ENST00000525078 LCE3DQ9BYE3 92 aa2.39□□□□□ -2.03
USP47-204ENST00000525078 TMEM14BQ9NUH8 114 aa2.39□□□□□ -2.03
USP47-204ENST00000525078 A0A087WTM6 91 aa2.38□□□□□ -2.03
USP47-204ENST00000525078 TRBV30A0A0K0K1B3 111 aa2.38□□□□□ -2.03
USP47-204ENST00000525078 HMGN2P05204 90 aaKnown RBP2.38□□□□□ -2.03
USP47-204ENST00000525078 WFDC6Q9BQY6 131 aa2.38□□□□□ -2.03
USP47-204ENST00000525078 CDC42SE2Q9NRR3 84 aa2.38□□□□□ -2.03
USP47-204ENST00000525078 COL5A1P20908 1838 aaPredicted RBP2.38□□□□□ -2.03
USP47-204ENST00000525078 CPSF4LA6NMK7 179 aaKnown RBP2.37□□□□□ -2.03
USP47-204ENST00000525078 TMEM14DPA8MWL7 114 aa2.37□□□□□ -2.03
USP47-204ENST00000525078 PI4KAP42356 2102 aa2.37□□□□□ -2.03
USP47-204ENST00000525078 EFNA4P52798 201 aa2.37□□□□□ -2.03
USP47-204ENST00000525078 CCL18P55774 89 aa2.37□□□□□ -2.03
USP47-204ENST00000525078 LINC01590Q5TEZ4 76 aa2.37□□□□□ -2.03
USP47-204ENST00000525078 BPESC1Q9GZL8 116 aa2.37□□□□□ -2.03
USP47-204ENST00000525078 PMCHL1Q16048 86 aa2.36□□□□□ -2.03
USP47-204ENST00000525078 VMO1Q7Z5L0 202 aa2.36□□□□□ -2.03
USP47-204ENST00000525078 RABAC1Q9UI14 185 aa2.36□□□□□ -2.03
USP47-204ENST00000525078 ARL2-SNX15V9GYD0 113 aa2.36□□□□□ -2.03
USP47-204ENST00000525078 NOTCH2Q04721 2471 aa2.36□□□□□ -2.03
USP47-204ENST00000525078 PRRC2BQ5JSZ5 2229 aaKnown RBP2.36□□□□□ -2.03
USP47-204ENST00000525078 CTXND1A0A1B0GTU2 59 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 A0A1B0GWA3 101 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 F8VRH5 84 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 H7BZZ5 65 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 TDRG1Q3Y452 100 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 BAGE3Q86Y29 109 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 SDK1Q7Z5N4 2213 aa2.35□□□□□ -2.03
USP47-204ENST00000525078 IGLC7A0M8Q6 106 aa2.34□□□□□ -2.03
USP47-204ENST00000525078 M0R135 149 aa2.34□□□□□ -2.03
USP47-204ENST00000525078 SERF2P84101 59 aa2.34□□□□□ -2.03
USP47-204ENST00000525078 COX14Q96I36 57 aa2.34□□□□□ -2.03
USP47-204ENST00000525078 PRH1P02810 166 aa2.33□□□□□ -2.04
USP47-204ENST00000525078 ACYP2P14621 99 aa2.33□□□□□ -2.04
USP47-204ENST00000525078 LINC00575Q6W349 94 aa2.33□□□□□ -2.04
USP47-204ENST00000525078 DOCK11Q5JSL3 2073 aa2.33□□□□□ -2.04
USP47-204ENST00000525078 TRBV25-1A0A075B6N4 114 aa2.32□□□□□ -2.04
USP47-204ENST00000525078 TRGV1A0A0A0MS02 117 aa2.32□□□□□ -2.04
USP47-204ENST00000525078 AMELXQ99217 191 aa2.32□□□□□ -2.04
USP47-204ENST00000525078 ZNF815PA8K554 130 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 SAA2P0DJI9 122 aaPredicted RBP2.31□□□□□ -2.04
USP47-204ENST00000525078 CD52P31358 61 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 ADIRFQ15847 76 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 PSMG4Q5JS54 123 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 BAGE2Q86Y30 109 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 FAM223AQ8IWN6 122 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 Q96NJ1 140 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 SPCS1Q9Y6A9 102 aa2.31□□□□□ -2.04
USP47-204ENST00000525078 UQCR11O14957 56 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 IGLC2P0DOY2 106 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 IGLC3P0DOY3 106 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 NMSQ5H8A3 153 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 LCE3AQ5TA76 89 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 C10orf99Q6UWK7 81 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 DEFB119Q8N690 84 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 TTTY10Q9BZA0 68 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 HIGD1BQ9P298 99 aa2.3□□□□□ -2.04
USP47-204ENST00000525078 ARHGAP5-AS1Q96IT6 56 aa2.29□□□□□ -2.04
USP47-204ENST00000525078 LINC01558Q9Y6Z2 57 aa2.29□□□□□ -2.04
USP47-204ENST00000525078 FAM223BA6NKX1 122 aa2.28□□□□□ -2.04
USP47-204ENST00000525078 F2Z2F3 143 aa2.28□□□□□ -2.04
USP47-204ENST00000525078 KRTAP6-3Q3LI67 103 aa2.28□□□□□ -2.04
USP47-204ENST00000525078 ETDBQ3ZM63 59 aa2.28□□□□□ -2.04
USP47-204ENST00000525078 ST20Q9HBF5 79 aa2.28□□□□□ -2.04
USP47-204ENST00000525078 GNG13Q9P2W3 67 aa2.28□□□□□ -2.04
USP47-204ENST00000525078 CEBPZOSA8MTT3 80 aa2.27□□□□□ -2.05
USP47-204ENST00000525078 BCE1O60756 84 aa2.27□□□□□ -2.05
USP47-204ENST00000525078 M0R3E3 92 aa2.26□□□□□ -2.05
USP47-204ENST00000525078 CACNA1BQ00975 2339 aa2.26□□□□□ -2.05
USP47-204ENST00000525078 ASCC3Q8N3C0 2202 aaKnown RBP2.25□□□□□ -2.05
USP47-204ENST00000525078 H0YGG7 62 aa2.25□□□□□ -2.05
USP47-204ENST00000525078 J3QKU1 62 aa2.25□□□□□ -2.05
USP47-204ENST00000525078 C3orf79P0CE67 100 aa2.25□□□□□ -2.05
USP47-204ENST00000525078 RPS27P42677 84 aaKnown RBP2.25□□□□□ -2.05
USP47-204ENST00000525078 ZNF137PP52743 207 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms