RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 LINC00337Q8N6G1 96 aa7.25□□□□□ -1.25
PDGFRB-207ENST00000520579 SMIM11BQ8TCY0 68 aa7.25□□□□□ -1.25
PDGFRB-207ENST00000520579 LINC00242Q5T6M2 205 aa7.24□□□□□ -1.25
PDGFRB-207ENST00000520579 NDUFA1O15239 70 aa7.24□□□□□ -1.25
PDGFRB-207ENST00000520579 LAMTOR3Q9UHA4 124 aa7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 FAM229BQ4G0N7 80 aa7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 C18orf65Q6ZTR6 163 aa7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 GCN1Q92616 2671 aaKnown RBP7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 ACANP16112 2415 aa7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 UTP20O75691 2785 aaKnown RBP7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 A0A096LPF7 62 aa7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 SLURP1P55000 103 aa7.23□□□□□ -1.25
PDGFRB-207ENST00000520579 C6orf223Q8N319 242 aa7.22□□□□□ -1.25
PDGFRB-207ENST00000520579 LOC100131303A0A0U1RQF7 123 aa7.22□□□□□ -1.25
PDGFRB-207ENST00000520579 SMIM1B2RUZ4 78 aa7.22□□□□□ -1.25
PDGFRB-207ENST00000520579 IGHV4-59P01825 116 aa7.22□□□□□ -1.25
PDGFRB-207ENST00000520579 NF1P21359 2839 aa7.21□□□□□ -1.25
PDGFRB-207ENST00000520579 IGHV4-61A0A0C4DH41 118 aa7.21□□□□□ -1.25
PDGFRB-207ENST00000520579 PLA2G2AP14555 144 aa7.21□□□□□ -1.26
PDGFRB-207ENST00000520579 LMO4P61968 165 aa7.21□□□□□ -1.26
PDGFRB-207ENST00000520579 PRR15Q8IV56 129 aa7.21□□□□□ -1.26
PDGFRB-207ENST00000520579 USMG5Q96IX5 58 aa7.21□□□□□ -1.26
PDGFRB-207ENST00000520579 LINC01600Q96MT4 127 aa7.21□□□□□ -1.26
PDGFRB-207ENST00000520579 A8MTW9 85 aa7.2□□□□□ -1.26
PDGFRB-207ENST00000520579 Q6ZTI0 123 aa7.2□□□□□ -1.26
PDGFRB-207ENST00000520579 C22orf24Q9Y442 160 aa7.2□□□□□ -1.26
PDGFRB-207ENST00000520579 TRAV7A0A075B6U4 112 aa7.2□□□□□ -1.26
PDGFRB-207ENST00000520579 DYNLRB2Q8TF09 96 aa7.2□□□□□ -1.26
PDGFRB-207ENST00000520579 UBL5Q9BZL1 73 aa7.2□□□□□ -1.26
PDGFRB-207ENST00000520579 ESRGQ1W209 222 aa7.19□□□□□ -1.26
PDGFRB-207ENST00000520579 OXLD1Q5BKU9 147 aa7.19□□□□□ -1.26
PDGFRB-207ENST00000520579 ZNF462Q96JM2 2506 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 TRGV2A0A075B6R0 118 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 FAM222AQ5U5X8 452 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 FLNCQ14315 2725 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 K7EQG2 157 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 TRAV13-2A0A0B4J235 113 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 TMEM256-PLSCR3K7ERE1 68 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 CCL18P55774 89 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 Q6ZRU5 148 aa7.18□□□□□ -1.26
PDGFRB-207ENST00000520579 MIFP14174 115 aa7.17□□□□□ -1.26
PDGFRB-207ENST00000520579 NOP10Q9NPE3 64 aaKnown RBP7.17□□□□□ -1.26
PDGFRB-207ENST00000520579 CFAP46Q8IYW2 2715 aa7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 IGLV10-54A0A075B6I4 117 aa7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 FUSP35637 526 aaKnown RBP eCLIP7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 IGKV2-28A0A075B6P5 120 aa7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 IGKV2D-28P01615 120 aa7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 COX7B2Q8TF08 81 aa7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 ANKRD17O75179 2603 aaKnown RBP7.16□□□□□ -1.26
PDGFRB-207ENST00000520579 K7EMT4 169 aa7.15□□□□□ -1.26
PDGFRB-207ENST00000520579 BEAN1Q3B7T3 259 aa7.15□□□□□ -1.26
PDGFRB-207ENST00000520579 C11orf71Q6IPW1 123 aa7.15□□□□□ -1.26
PDGFRB-207ENST00000520579 APCP25054 2843 aa7.15□□□□□ -1.26
PDGFRB-207ENST00000520579 ORMDL1Q9P0S3 153 aa7.15□□□□□ -1.26
PDGFRB-207ENST00000520579 EPM2AB3EWF7 344 aa7.15□□□□□ -1.27
PDGFRB-207ENST00000520579 ESM1Q9NQ30 184 aa7.14□□□□□ -1.27
PDGFRB-207ENST00000520579 FASNP49327 2511 aaKnown RBP7.14□□□□□ -1.27
PDGFRB-207ENST00000520579 TRAV10A0A0B4J240 114 aa7.14□□□□□ -1.27
PDGFRB-207ENST00000520579 DEFB112Q30KQ8 113 aa7.14□□□□□ -1.27
PDGFRB-207ENST00000520579 NTM-AS1Q6ZSK4 140 aa7.14□□□□□ -1.27
PDGFRB-207ENST00000520579 MDFIQ99750 246 aa7.14□□□□□ -1.27
PDGFRB-207ENST00000520579 NDUFC1O43677 76 aa7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 ATP5EP56381 51 aaPredicted RBP7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 NANOS2P60321 138 aaKnown RBP7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 C9orf116Q5BN46 136 aaPredicted RBP7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 KTN1-AS1Q86SY8 53 aa7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 IGHV4-30-2A0A087WSY4 118 aa7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 DEFB130BP0DP73 79 aa7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 DEFB130AP0DP74 79 aa7.13□□□□□ -1.27
PDGFRB-207ENST00000520579 CR1P17927 2039 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 IGLV4-60A0A075B6I1 120 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 TRGV4A0A0C4DH28 118 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 C11orf72Q8NBR9 251 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 WFDC10AQ9H1F0 79 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 TEX15Q9BXT5 2789 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 KLKP1Q107X0 134 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 MXRA5Q9NR99 2828 aa7.12□□□□□ -1.27
PDGFRB-207ENST00000520579 M0R2N4 97 aa7.11□□□□□ -1.27
PDGFRB-207ENST00000520579 CCL24O00175 119 aa7.11□□□□□ -1.27
PDGFRB-207ENST00000520579 PRR4Q16378 134 aa7.11□□□□□ -1.27
PDGFRB-207ENST00000520579 IGLV5-39A0A0G2JS06 123 aa7.1□□□□□ -1.27
PDGFRB-207ENST00000520579 A6NDX4 124 aa7.1□□□□□ -1.27
PDGFRB-207ENST00000520579 INSP01308 110 aa7.1□□□□□ -1.27
PDGFRB-207ENST00000520579 Q8N9L7 120 aa7.1□□□□□ -1.27
PDGFRB-207ENST00000520579 CDC42SE2Q9NRR3 84 aa7.1□□□□□ -1.27
PDGFRB-207ENST00000520579 TM2D3Q9BRN9 247 aa7.09□□□□□ -1.27
PDGFRB-207ENST00000520579 C1orf158Q8N1D5 194 aa7.09□□□□□ -1.27
PDGFRB-207ENST00000520579 CHKB-CPT1BH3BT56 60 aa7.09□□□□□ -1.27
PDGFRB-207ENST00000520579 C8orf87E5RJ46 101 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 GNLYP22749 145 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 C6orf99Q4VX62 202 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 A8MU10 97 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 K7EQD1 137 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 M0R378 163 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 ZNF73O43830 326 aaPredicted RBP7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 H0YGX0 51 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 IGLV1-40P01703 118 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 ATP5EP2Q5VTU8 51 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 TMEM254Q8TBM7 123 aa7.08□□□□□ -1.28
PDGFRB-207ENST00000520579 UBE2BP63146 152 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms