RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ZNF664Q8N3J9 261 aa4.36□□□□□ -1.71
SDCBP-208ENST00000520228 CHCHD10Q8WYQ3 142 aaPredicted RBP4.36□□□□□ -1.71
SDCBP-208ENST00000520228 CDC42SE2Q9NRR3 84 aa4.36□□□□□ -1.71
SDCBP-208ENST00000520228 LAMTOR2Q9Y2Q5 125 aa4.36□□□□□ -1.71
SDCBP-208ENST00000520228 CSDC2Q9Y534 153 aaKnown RBP4.36□□□□□ -1.71
SDCBP-208ENST00000520228 LRP1BQ9NZR2 4599 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 LOC389332A0A1B0GUA5 103 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 LINC00959A0A1B0GUT2 108 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 APOC3P02656 99 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 XCL1P47992 114 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 SS18Q15532 418 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 NDUFA5Q16718 116 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 TIMM21Q9BVV7 248 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 MAP1LC3AQ9H492 121 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 UBE2D4Q9Y2X8 147 aa4.35□□□□□ -1.71
SDCBP-208ENST00000520228 A0A1B0GWB2 263 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 H0Y9J4 135 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 CCL25O15444 150 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 RPL39P62891 51 aaKnown RBP4.34□□□□□ -1.71
SDCBP-208ENST00000520228 SVBPQ8N300 66 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 Q8N8P6 123 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 GNB1LQ9BYB4 327 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 SPANXA1Q9NS26 97 aa4.34□□□□□ -1.71
SDCBP-208ENST00000520228 DNAH5Q8TE73 4624 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 TRAV13-1A0A0B4J241 112 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 C1orf196B1AJZ1 125 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 PANO1I0J062 215 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 SNAPINO95295 136 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 COX19Q49B96 90 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 RNASE13Q5GAN3 156 aaKnown RBP4.33□□□□□ -1.72
SDCBP-208ENST00000520228 Q6ZUT4 128 aa4.33□□□□□ -1.72
SDCBP-208ENST00000520228 NXT2Q9NPJ8 142 aaKnown RBP4.33□□□□□ -1.72
SDCBP-208ENST00000520228 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.32□□□□□ -1.72
SDCBP-208ENST00000520228 K7EMI3 77 aa4.32□□□□□ -1.72
SDCBP-208ENST00000520228 MT-ND6P03923 174 aa4.32□□□□□ -1.72
SDCBP-208ENST00000520228 IFI27P40305 119 aaPredicted RBP4.32□□□□□ -1.72
SDCBP-208ENST00000520228 CNBPP62633 177 aaKnown RBP4.32□□□□□ -1.72
SDCBP-208ENST00000520228 HAMPP81172 84 aa4.32□□□□□ -1.72
SDCBP-208ENST00000520228 MRPS36P82909 103 aaKnown RBP4.32□□□□□ -1.72
SDCBP-208ENST00000520228 FABP9Q0Z7S8 132 aa4.32□□□□□ -1.72
SDCBP-208ENST00000520228 ORMDL2Q53FV1 153 aa4.32□□□□□ -1.72
SDCBP-208ENST00000520228 C15orf56Q8N910 161 aa4.32□□□□□ -1.72
SDCBP-208ENST00000520228 GVQW2A0A096LPI5 108 aaPredicted RBP4.31□□□□□ -1.72
SDCBP-208ENST00000520228 TGIF2-C20orf24A0A0A6YYL0 155 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 IGHV1-58A0A0C4DH39 117 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 COX7A2LO14548 114 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 SMR3BP02814 79 aaPredicted RBP4.31□□□□□ -1.72
SDCBP-208ENST00000520228 G0S2P27469 103 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 Q6ZSA8 131 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 C9orf163Q8N9P6 203 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 C7orf33Q8WU49 177 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 FAM104AQ969W3 186 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 CYSLTR1Q9Y271 337 aa4.31□□□□□ -1.72
SDCBP-208ENST00000520228 IGHV3-64A0A075B6Q5 118 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 ZNF861PO60384 105 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 SDIM1Q6ZPB5 146 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 C5orf38Q86SI9 138 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 SLC7A5P1Q8MH63 180 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 CHAC1Q9BUX1 264 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 TRAPPC1Q9Y5R8 145 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 HSPG2P98160 4391 aa4.3□□□□□ -1.72
SDCBP-208ENST00000520228 Q6ZN92 141 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 TEX43Q6ZNM6 134 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 FA2HQ7L5A8 372 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 SCXQ7RTU7 201 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 DPH3Q96FX2 82 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 TMEM141Q96I45 108 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 C2orf88Q9BSF0 95 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 VCX2Q9H322 139 aa4.29□□□□□ -1.72
SDCBP-208ENST00000520228 APOBP04114 4563 aaKnown RBP4.29□□□□□ -1.72
SDCBP-208ENST00000520228 IGHV3OR16-9A0A0B4J2B5 98 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 IGIPA6NJ69 53 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 APOMO95445 188 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 Q5VSD8 79 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 CIRBP-AS1Q8TBR5 109 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 TOMM6Q96B49 74 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 LINC00526Q96FQ7 95 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 SCGB3A1Q96QR1 104 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 SMCO4Q9NRQ5 59 aa4.28□□□□□ -1.72
SDCBP-208ENST00000520228 SRRM2Q9UQ35 2752 aaKnown RBP4.27□□□□□ -1.73
SDCBP-208ENST00000520228 IGLV4-69A0A075B6H9 119 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 LINC01546A6NGU7 62 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 LINC01549A6NIU2 74 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 UBE2D1P51668 147 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 COX6A2Q02221 97 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 SYCNQ0VAF6 134 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 CBLN2Q8IUK8 224 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 CARD19Q96LW7 228 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 YPEL4Q96NS1 127 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 AMELXQ99217 191 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 TIMM17AQ99595 171 aa4.27□□□□□ -1.73
SDCBP-208ENST00000520228 LINC00614P0C842 121 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 CHTF8P0CG12 524 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 HNRNPA3P51991 378 aaKnown RBP4.26□□□□□ -1.73
SDCBP-208ENST00000520228 SPAG11BQ08648 103 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 LINC00173Q6ZV60 143 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 OR10D4PQ8NGN7 298 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 ORAOV1Q8WV07 137 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 CAMK2N2Q96S95 79 aa4.26□□□□□ -1.73
SDCBP-208ENST00000520228 PKIGQ9Y2B9 76 aa4.26□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 157.6 ms