RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 FAM236CP0DP71 79 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 MIFP14174 115 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 UNQ6190/PRO20217Q6UXQ8 127 aa5.93□□□□□ -1.46
LIMCH1-216ENST00000512820 CYSRT1A8MQ03 144 aa5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 DOPEY1Q5JWR5 2465 aa5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 EIF4EBP3O60516 100 aaPredicted RBP5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 NDUFC2O95298 119 aa5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 LELP1Q5T871 98 aa5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 HILS1P60008 231 aa5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 SPEGQ15772 3267 aa5.92□□□□□ -1.46
LIMCH1-216ENST00000512820 BPY2O14599 106 aa5.91□□□□□ -1.46
LIMCH1-216ENST00000512820 A0A1B0GUV1 79 aa5.91□□□□□ -1.46
LIMCH1-216ENST00000512820 MRAPQ8TCY5 172 aa5.91□□□□□ -1.46
LIMCH1-216ENST00000512820 PKD1L2Q7Z442 2459 aa5.9□□□□□ -1.46
LIMCH1-216ENST00000512820 ZNF462Q96JM2 2506 aa5.9□□□□□ -1.46
LIMCH1-216ENST00000512820 FAM110AQ9BQ89 295 aa5.9□□□□□ -1.46
LIMCH1-216ENST00000512820 MTORP42345 2549 aa5.9□□□□□ -1.46
LIMCH1-216ENST00000512820 ZNF73O43830 326 aaPredicted RBP5.9□□□□□ -1.47
LIMCH1-216ENST00000512820 NBEAQ8NFP9 2946 aa5.89□□□□□ -1.47
LIMCH1-216ENST00000512820 MUC7Q8TAX7 377 aa5.89□□□□□ -1.47
LIMCH1-216ENST00000512820 ZFYVE26Q68DK2 2539 aa5.89□□□□□ -1.47
LIMCH1-216ENST00000512820 SNURFQ9Y675 71 aa5.89□□□□□ -1.47
LIMCH1-216ENST00000512820 DSPP15924 2871 aaKnown RBP5.89□□□□□ -1.47
LIMCH1-216ENST00000512820 C5orf47Q569G3 176 aa5.89□□□□□ -1.47
LIMCH1-216ENST00000512820 TRBV10-3A0A0K0K1G6 114 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 M0R378 163 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 C16orf95Q9H693 158 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 A8MTW9 85 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 INAFM1C9JVW0 142 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 FAM19A1Q7Z5A9 133 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 C6orf223Q8N319 242 aa5.88□□□□□ -1.47
LIMCH1-216ENST00000512820 ANKRD17O75179 2603 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 NHLRC4P0CG21 123 aaPredicted RBP5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 SPTBN5Q9NRC6 3674 aaKnown RBP5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 IGKV2-28A0A075B6P5 120 aa5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 IGKV2D-28P01615 120 aa5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 SYCNQ0VAF6 134 aa5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 LINC01561Q8N1V8 128 aa5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 C3orf84H3BNL1 204 aa5.87□□□□□ -1.47
LIMCH1-216ENST00000512820 LOC107984640A0A0U1RRK4 108 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 CDK2AP2O75956 126 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 KPRPQ5T749 579 aaPredicted RBP5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 LINC00575Q6W349 94 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 C11orf45Q8TAV5 145 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 FSHBP01225 129 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 SMCR5Q8TEV8 140 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 FRYLO94915 3013 aa5.86□□□□□ -1.47
LIMCH1-216ENST00000512820 JMJD1CQ15652 2540 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 LY6G6DO95868 133 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 REV3LO60673 3130 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 TRAV7A0A075B6U4 112 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 DEFB131BA0A096LNP1 70 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 FAM19A5Q7Z5A7 132 aaPredicted RBP5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 SMR3AQ99954 134 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 PPDPFQ9H3Y8 114 aa5.85□□□□□ -1.47
LIMCH1-216ENST00000512820 FAM19A3Q7Z5A8 133 aa5.84□□□□□ -1.47
LIMCH1-216ENST00000512820 PRB2P02812 416 aaPredicted RBP5.84□□□□□ -1.48
LIMCH1-216ENST00000512820 CRYGAP11844 174 aa5.84□□□□□ -1.48
LIMCH1-216ENST00000512820 MP68P56378 58 aa5.84□□□□□ -1.48
LIMCH1-216ENST00000512820 NDUFC1O43677 76 aa5.83□□□□□ -1.48
LIMCH1-216ENST00000512820 IGHV4-30-4P0DP06 118 aa5.83□□□□□ -1.48
LIMCH1-216ENST00000512820 EGFEM1PQ0D2K5 195 aa5.83□□□□□ -1.48
LIMCH1-216ENST00000512820 ACANP16112 2415 aa5.83□□□□□ -1.48
LIMCH1-216ENST00000512820 Q6ZVQ6 151 aa5.83□□□□□ -1.48
LIMCH1-216ENST00000512820 FRYQ5TBA9 3013 aa5.83□□□□□ -1.48
LIMCH1-216ENST00000512820 Q8N3U1 123 aa5.82□□□□□ -1.48
LIMCH1-216ENST00000512820 IGKV2-24A0A0C4DH68 120 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 LINC01547P58512 204 aaPredicted RBP5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 MPLKIPQ8TAP9 179 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 NDUFC2-KCTD14E9PQ53 114 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 HRCT1Q6UXD1 115 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 BRK1Q8WUW1 75 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 HIGD2AQ9BW72 106 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 RPL37AP8A6NKH3 93 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 ZNF292O60281 2723 aa5.81□□□□□ -1.48
LIMCH1-216ENST00000512820 DHRS4-AS1Q9P1J3 65 aa5.8□□□□□ -1.48
LIMCH1-216ENST00000512820 A0A096LNT2 108 aa5.8□□□□□ -1.48
LIMCH1-216ENST00000512820 IL17DQ8TAD2 202 aa5.8□□□□□ -1.48
LIMCH1-216ENST00000512820 EYSQ5T1H1 3165 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 ATP5EP56381 51 aaPredicted RBP5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 C10orf25Q5T742 122 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 FAM104AQ969W3 186 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 X6R8D5 127 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 LYPD5Q6UWN5 251 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 CELA1Q9UNI1 258 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 SERP1Q9Y6X1 66 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 UBE2AP49459 152 aa5.79□□□□□ -1.48
LIMCH1-216ENST00000512820 RETNQ9HD89 108 aa5.78□□□□□ -1.48
LIMCH1-216ENST00000512820 WFDC10BQ8IUB3 73 aa5.78□□□□□ -1.48
LIMCH1-216ENST00000512820 OXLD1Q5BKU9 147 aa5.78□□□□□ -1.48
LIMCH1-216ENST00000512820 LINC01600Q96MT4 127 aa5.78□□□□□ -1.48
LIMCH1-216ENST00000512820 NANOS2P60321 138 aaKnown RBP5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 MYO15AQ9UKN7 3530 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 AKAP13Q12802 2813 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 SMIM26A0A096LP01 95 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 NDUFS5O43920 106 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 NDUFB1O75438 58 aa5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 GIG44P09565 113 aaPredicted RBP5.77□□□□□ -1.49
LIMCH1-216ENST00000512820 Q6ZRU5 148 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms