RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 HIST1H2BJP06899 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 PRSS2P07478 247 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BOP23527 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BBP33778 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HNRNPA3P51991 378 aaKnown RBP8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BDP58876 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BCP62807 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST2H2BEQ16778 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BHQ93079 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BNQ99877 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 HIST1H2BMQ99879 126 aa8.78□□□□□ -1
DDX41-212ENST00000511040 PKHD1L1Q86WI1 4243 aa8.78□□□□□ -1
DDX41-212ENST00000511040 TINCRA0A1B0GVN0 87 aa8.77□□□□□ -1.01
DDX41-212ENST00000511040 A0A1W2PNN7 141 aa8.77□□□□□ -1.01
DDX41-212ENST00000511040 LINC00310P59036 64 aa8.77□□□□□ -1.01
DDX41-212ENST00000511040 PDZD11Q5EBL8 140 aa8.77□□□□□ -1.01
DDX41-212ENST00000511040 C7orf33Q8WU49 177 aa8.77□□□□□ -1.01
DDX41-212ENST00000511040 CKS1BP61024 79 aa8.76□□□□□ -1.01
DDX41-212ENST00000511040 GAGE2EQ4V326 116 aa8.76□□□□□ -1.01
DDX41-212ENST00000511040 C9orf116Q5BN46 136 aaPredicted RBP8.76□□□□□ -1.01
DDX41-212ENST00000511040 C6orf226Q5I0X4 101 aa8.76□□□□□ -1.01
DDX41-212ENST00000511040 Q6ZRP5 223 aa8.76□□□□□ -1.01
DDX41-212ENST00000511040 GAGE2DQ9UEU5 116 aa8.76□□□□□ -1.01
DDX41-212ENST00000511040 SMIM1B2RUZ4 78 aa8.75□□□□□ -1.01
DDX41-212ENST00000511040 NUPR1O60356 82 aa8.75□□□□□ -1.01
DDX41-212ENST00000511040 SPINK8P0C7L1 97 aa8.75□□□□□ -1.01
DDX41-212ENST00000511040 Q8IZM0 81 aa8.75□□□□□ -1.01
DDX41-212ENST00000511040 MYCBP2O75592 4640 aa8.75□□□□□ -1.01
DDX41-212ENST00000511040 IGLV5-45A0A087WSX0 123 aa8.74□□□□□ -1.01
DDX41-212ENST00000511040 TRBV30A0A0K0K1B3 111 aa8.74□□□□□ -1.01
DDX41-212ENST00000511040 ATP5LO75964 103 aa8.74□□□□□ -1.01
DDX41-212ENST00000511040 BAGE3Q86Y29 109 aa8.74□□□□□ -1.01
DDX41-212ENST00000511040 CHCHD1Q96BP2 118 aaKnown RBP8.74□□□□□ -1.01
DDX41-212ENST00000511040 FAM168BA1KXE4 195 aa8.73□□□□□ -1.01
DDX41-212ENST00000511040 TLX1NBP0CAT3 122 aa8.73□□□□□ -1.01
DDX41-212ENST00000511040 IGLC3P0DOY3 106 aa8.72□□□□□ -1.01
DDX41-212ENST00000511040 FAM19A2Q8N3H0 131 aa8.72□□□□□ -1.01
DDX41-212ENST00000511040 COX7B2Q8TF08 81 aa8.72□□□□□ -1.01
DDX41-212ENST00000511040 NDUFC2-KCTD14E9PQ53 114 aa8.71□□□□□ -1.02
DDX41-212ENST00000511040 H3BRM9 83 aa8.71□□□□□ -1.02
DDX41-212ENST00000511040 PRR3P79522 188 aaKnown RBP8.71□□□□□ -1.02
DDX41-212ENST00000511040 PHF5AQ7RTV0 110 aaKnown RBP8.71□□□□□ -1.02
DDX41-212ENST00000511040 FAM19A5Q7Z5A7 132 aaPredicted RBP8.71□□□□□ -1.02
DDX41-212ENST00000511040 C11orf86A6NJI1 115 aa8.7□□□□□ -1.02
DDX41-212ENST00000511040 F8VRH5 84 aa8.7□□□□□ -1.02
DDX41-212ENST00000511040 J3QL48 77 aa8.7□□□□□ -1.02
DDX41-212ENST00000511040 HSBP1O75506 76 aa8.7□□□□□ -1.02
DDX41-212ENST00000511040 SERF1AO75920 110 aa8.7□□□□□ -1.02
DDX41-212ENST00000511040 ZNF22P17026 224 aaPredicted RBP8.7□□□□□ -1.02
DDX41-212ENST00000511040 COA6Q5JTJ3 125 aaKnown RBP8.69□□□□□ -1.02
DDX41-212ENST00000511040 IFI27L1Q96BM0 104 aa8.69□□□□□ -1.02
DDX41-212ENST00000511040 CXCL5P42830 114 aa8.68□□□□□ -1.02
DDX41-212ENST00000511040 C9orf129Q5T035 196 aaKnown RBP8.68□□□□□ -1.02
DDX41-212ENST00000511040 TMA7Q9Y2S6 64 aaKnown RBP8.68□□□□□ -1.02
DDX41-212ENST00000511040 CHTOPQ9Y3Y2 248 aaKnown RBP8.68□□□□□ -1.02
DDX41-212ENST00000511040 KRTAP29-1A8MX34 341 aaPredicted RBP8.67□□□□□ -1.02
DDX41-212ENST00000511040 TMEM170BQ5T4T1 132 aa8.67□□□□□ -1.02
DDX41-212ENST00000511040 KRTAP7-1Q8IUC3 87 aa8.67□□□□□ -1.02
DDX41-212ENST00000511040 XAGE1AQ9HD64 81 aa8.67□□□□□ -1.02
DDX41-212ENST00000511040 H0Y8G0 127 aa8.66□□□□□ -1.02
DDX41-212ENST00000511040 IGLV5-39A0A0G2JS06 123 aa8.65□□□□□ -1.02
DDX41-212ENST00000511040 DMBT1Q9UGM3 2413 aaPredicted RBP8.64□□□□□ -1.03
DDX41-212ENST00000511040 FAT3Q8TDW7 4589 aa8.64□□□□□ -1.03
DDX41-212ENST00000511040 TRAV12-1A0A0B4J245 112 aa8.64□□□□□ -1.03
DDX41-212ENST00000511040 M0QXV9 152 aa8.64□□□□□ -1.03
DDX41-212ENST00000511040 SERTAD4-AS1Q5TG53 156 aa8.64□□□□□ -1.03
DDX41-212ENST00000511040 KRTAP11-1Q8IUC1 163 aa8.64□□□□□ -1.03
DDX41-212ENST00000511040 PSORS1C2Q9UIG4 136 aa8.64□□□□□ -1.03
DDX41-212ENST00000511040 LRP1Q07954 4544 aaKnown RBP8.64□□□□□ -1.03
DDX41-212ENST00000511040 OXTP01178 125 aa8.63□□□□□ -1.03
DDX41-212ENST00000511040 C5orf52A6NGY3 159 aa8.62□□□□□ -1.03
DDX41-212ENST00000511040 LEPROTL1O95214 131 aa8.62□□□□□ -1.03
DDX41-212ENST00000511040 FABP4P15090 132 aa8.62□□□□□ -1.03
DDX41-212ENST00000511040 SNRPEP62304 92 aaKnown RBP8.62□□□□□ -1.03
DDX41-212ENST00000511040 C1orf137Q5JT78 98 aa8.62□□□□□ -1.03
DDX41-212ENST00000511040 HIST3H2BBQ8N257 126 aa8.62□□□□□ -1.03
DDX41-212ENST00000511040 PFN2P35080 140 aa8.61□□□□□ -1.03
DDX41-212ENST00000511040 UBE2BP63146 152 aa8.61□□□□□ -1.03
DDX41-212ENST00000511040 ZNF625Q96I27 306 aaPredicted RBP8.61□□□□□ -1.03
DDX41-212ENST00000511040 TMEM223A0PJW6 202 aa8.6□□□□□ -1.03
DDX41-212ENST00000511040 ODF1Q14990 250 aa8.6□□□□□ -1.03
DDX41-212ENST00000511040 HSPB8Q9UJY1 196 aa8.6□□□□□ -1.03
DDX41-212ENST00000511040 C22orf24Q9Y442 160 aa8.59□□□□□ -1.03
DDX41-212ENST00000511040 SRSF9Q13242 221 aaKnown RBP eCLIP8.58□□□□□ -1.04
DDX41-212ENST00000511040 SPINK6Q6UWN8 80 aa8.58□□□□□ -1.04
DDX41-212ENST00000511040 PMCHL2Q9BQD1 86 aa8.58□□□□□ -1.04
DDX41-212ENST00000511040 ERG28Q9UKR5 140 aa8.58□□□□□ -1.04
DDX41-212ENST00000511040 HIST1H2BLQ99880 126 aa8.57□□□□□ -1.04
DDX41-212ENST00000511040 S100A6P06703 90 aa8.56□□□□□ -1.04
DDX41-212ENST00000511040 GAGE10A6NGK3 116 aa8.55□□□□□ -1.04
DDX41-212ENST00000511040 IGLV7-43P04211 117 aa8.55□□□□□ -1.04
DDX41-212ENST00000511040 MT1HL1P0DM35 61 aa8.55□□□□□ -1.04
DDX41-212ENST00000511040 SND1-IT1Q9HBX3 110 aa8.55□□□□□ -1.04
DDX41-212ENST00000511040 A0A0U1RRA0 63 aa8.54□□□□□ -1.04
DDX41-212ENST00000511040 LBHQ53QV2 105 aaPredicted RBP8.54□□□□□ -1.04
DDX41-212ENST00000511040 MRPL55Q7Z7F7 128 aaKnown RBP8.54□□□□□ -1.04
DDX41-212ENST00000511040 RPL37AP8A6NKH3 93 aa8.53□□□□□ -1.04
DDX41-212ENST00000511040 DPM2O94777 84 aa8.53□□□□□ -1.04
DDX41-212ENST00000511040 PLNP26678 52 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 93 ms