RNA–Protein interactions for RNA: ENST00000495817.1

CCDC39-207, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 1,047 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-207ENST00000495817 ASIPP42127 132 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 RHOHQ15669 191 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 ZCCHC23Q6ZST2 131 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 DEFB106AQ8N104 65 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 FDCSPQ8NFU4 85 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 TSLPQ969D9 159 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 AMELYQ99218 206 aa2.09□□□□□ -2.07
CCDC39-207ENST00000495817 NHP2Q9NX24 153 aaKnown RBP2.09□□□□□ -2.07
CCDC39-207ENST00000495817 KNTC1P50748 2209 aa2.09□□□□□ -2.08
CCDC39-207ENST00000495817 ANK2Q01484 3957 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 GYPAP02724 150 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 PIPP12273 146 aaPredicted RBP2.08□□□□□ -2.08
CCDC39-207ENST00000495817 SNRPFP62306 86 aaKnown RBP2.08□□□□□ -2.08
CCDC39-207ENST00000495817 CASC2Q6XLA1 102 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 ZNF826PQ6ZT77 177 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 SLC25A26Q70HW3 274 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 FAM213BQ8TBF2 198 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 DYNLRB2Q8TF09 96 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 MUCL1Q96DR8 90 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 S100A16Q96FQ6 103 aaKnown RBP2.08□□□□□ -2.08
CCDC39-207ENST00000495817 SMIM7Q9BQ49 75 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 CYSTM1Q9H1C7 97 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 SMCO4Q9NRQ5 59 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 LINC00474Q9P2X8 69 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 NDUFA12Q9UI09 145 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 HIVEP3Q5T1R4 2406 aa2.08□□□□□ -2.08
CCDC39-207ENST00000495817 PRRC2CQ9Y520 2896 aaKnown RBP2.08□□□□□ -2.08
CCDC39-207ENST00000495817 RP1L1Q8IWN7 2480 aaPredicted RBP2.07□□□□□ -2.08
CCDC39-207ENST00000495817 ATOX1O00244 68 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 FAUP35544 74 aaKnown RBP2.07□□□□□ -2.08
CCDC39-207ENST00000495817 SPANXN1Q5VSR9 72 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 COMMD6Q7Z4G1 85 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 ARPINQ7Z6K5 226 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 SMR3AQ99954 134 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 C14orf132Q9NPU4 83 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 MED13Q9UHV7 2174 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 CCDC168Q8NDH2 2452 aa2.07□□□□□ -2.08
CCDC39-207ENST00000495817 CCKP06307 115 aa2.06□□□□□ -2.08
CCDC39-207ENST00000495817 DEFB113Q30KQ7 82 aa2.06□□□□□ -2.08
CCDC39-207ENST00000495817 C15orf53Q8NAA6 179 aa2.06□□□□□ -2.08
CCDC39-207ENST00000495817 SPCS1Q9Y6A9 102 aa2.06□□□□□ -2.08
CCDC39-207ENST00000495817 HRNRQ86YZ3 2850 aaPredicted RBP2.06□□□□□ -2.08
CCDC39-207ENST00000495817 NIPBLQ6KC79 2804 aaeCLIP2.05□□□□□ -2.08
CCDC39-207ENST00000495817 DOCK11Q5JSL3 2073 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 MED12LQ86YW9 2145 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 PCNX1Q96RV3 2341 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 ABCA2Q9BZC7 2435 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 ANKHD1Q8IWZ3 2542 aaKnown RBP2.05□□□□□ -2.08
CCDC39-207ENST00000495817 TRAV17A0A0B4J275 112 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 TFF1P04155 84 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 UBE2G1P62253 170 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 DEFB110Q30KQ9 67 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 SLC48A1Q6P1K1 146 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 Q8TAT8 98 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 MYOZ3Q8TDC0 251 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 COX14Q96I36 57 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 TMEM141Q96I45 108 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 ST20Q9HBF5 79 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 CRCT1Q9UGL9 99 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 SPG11Q96JI7 2443 aa2.05□□□□□ -2.08
CCDC39-207ENST00000495817 A0A1W2PPM0 123 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 CRYM-AS1A6NIL9 109 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 H3BRM9 83 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 CFDP00746 253 aaPredicted RBP2.04□□□□□ -2.08
CCDC39-207ENST00000495817 ASAH2BP0C7U1 165 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 IGLC2P0DOY2 106 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 IGLC3P0DOY3 106 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 COX6B1P14854 86 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 POLR2JP52435 117 aaKnown RBP2.04□□□□□ -2.08
CCDC39-207ENST00000495817 DSCR4P56555 118 aaPredicted RBP2.04□□□□□ -2.08
CCDC39-207ENST00000495817 GNG11P61952 73 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 SEC11AP67812 179 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 LINC00299Q6ZSB3 139 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 NINQ8N4C6 2090 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 OR10AG1Q8NH19 301 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 PPDPFLQ8WWR9 84 aa2.04□□□□□ -2.08
CCDC39-207ENST00000495817 HEATR1Q9H583 2144 aaKnown RBP2.04□□□□□ -2.08
CCDC39-207ENST00000495817 NSD1Q96L73 2696 aaPredicted RBP2.04□□□□□ -2.08
CCDC39-207ENST00000495817 ZGRF1Q86YA3 2104 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 IGKV2-29A2NJV5 120 aaPredicted RBP2.03□□□□□ -2.08
CCDC39-207ENST00000495817 E7EUB6 86 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 MIFP14174 115 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 MIR22HGQ0VDD5 57 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 ADIRFQ15847 76 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 ETDBQ3ZM63 59 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 SPANXN5Q5MJ07 72 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 SPTSSBQ8NFR3 76 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 S100ZQ8WXG8 99 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 MRPL35Q9NZE8 188 aaKnown RBP2.03□□□□□ -2.08
CCDC39-207ENST00000495817 CACFD1Q9UGQ2 172 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 SVEP1Q4LDE5 3571 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 MED13LQ71F56 2210 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 ESPL1Q14674 2120 aa2.03□□□□□ -2.08
CCDC39-207ENST00000495817 MEGF8Q7Z7M0 2845 aa2.03□□□□□ -2.09
CCDC39-207ENST00000495817 STAB1Q9NY15 2570 aa2.03□□□□□ -2.09
CCDC39-207ENST00000495817 HMCN1Q96RW7 5635 aa2.02□□□□□ -2.09
CCDC39-207ENST00000495817 UNC13CQ8NB66 2214 aa2.02□□□□□ -2.09
CCDC39-207ENST00000495817 HEATR5BQ9P2D3 2071 aa2.02□□□□□ -2.09
CCDC39-207ENST00000495817 FLNAP21333 2647 aaKnown RBP2.02□□□□□ -2.09
CCDC39-207ENST00000495817 A0A087WSZ3 146 aa2.02□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms