RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 C6orf99Q4VX62 202 aa11.73□□□□□ -0.53
CCDC88B-209ENST00000494080 V9GYY9 64 aa11.73□□□□□ -0.53
CCDC88B-209ENST00000494080 COX6A2Q02221 97 aa11.72□□□□□ -0.53
CCDC88B-209ENST00000494080 SMIM1B2RUZ4 78 aa11.72□□□□□ -0.53
CCDC88B-209ENST00000494080 C1orf158Q8N1D5 194 aa11.72□□□□□ -0.53
CCDC88B-209ENST00000494080 LINC00315P59091 139 aa11.71□□□□□ -0.53
CCDC88B-209ENST00000494080 HIGD2BQ4VC39 106 aa11.71□□□□□ -0.53
CCDC88B-209ENST00000494080 CHCHD10Q8WYQ3 142 aaPredicted RBP11.71□□□□□ -0.53
CCDC88B-209ENST00000494080 FRYQ5TBA9 3013 aa11.71□□□□□ -0.54
CCDC88B-209ENST00000494080 CHCHD7Q9BUK0 85 aa11.71□□□□□ -0.54
CCDC88B-209ENST00000494080 PDE6GP18545 87 aa11.7□□□□□ -0.54
CCDC88B-209ENST00000494080 C11orf45Q8TAV5 145 aa11.7□□□□□ -0.54
CCDC88B-209ENST00000494080 ETDCA0A1B0GVM5 59 aa11.7□□□□□ -0.54
CCDC88B-209ENST00000494080 IGLV1-51P01701 117 aa11.7□□□□□ -0.54
CCDC88B-209ENST00000494080 OXLD1Q5BKU9 147 aa11.7□□□□□ -0.54
CCDC88B-209ENST00000494080 DIRC1Q969H9 104 aa11.7□□□□□ -0.54
CCDC88B-209ENST00000494080 A0A087WYN8 130 aa11.69□□□□□ -0.54
CCDC88B-209ENST00000494080 FUSP35637 526 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC88B-209ENST00000494080 RPL28P46779 137 aaKnown RBP11.69□□□□□ -0.54
CCDC88B-209ENST00000494080 ITPR3Q14573 2671 aa11.69□□□□□ -0.54
CCDC88B-209ENST00000494080 FRYLO94915 3013 aa11.68□□□□□ -0.54
CCDC88B-209ENST00000494080 MIFP14174 115 aa11.68□□□□□ -0.54
CCDC88B-209ENST00000494080 CDC42SE2Q9NRR3 84 aa11.67□□□□□ -0.54
CCDC88B-209ENST00000494080 LINC00846Q9NV44 126 aa11.67□□□□□ -0.54
CCDC88B-209ENST00000494080 Q6ZSN1 163 aa11.67□□□□□ -0.54
CCDC88B-209ENST00000494080 NDUFC2-KCTD14E9PQ53 114 aa11.66□□□□□ -0.54
CCDC88B-209ENST00000494080 DEFB131BA0A096LNP1 70 aa11.65□□□□□ -0.54
CCDC88B-209ENST00000494080 Q8N2B8 174 aa11.65□□□□□ -0.54
CCDC88B-209ENST00000494080 NBEAQ8NFP9 2946 aa11.65□□□□□ -0.54
CCDC88B-209ENST00000494080 BOD1L1Q8NFC6 3051 aa11.65□□□□□ -0.54
CCDC88B-209ENST00000494080 KIR2DL5BQ8NHK3 375 aa11.65□□□□□ -0.55
CCDC88B-209ENST00000494080 HELZ2Q9BYK8 2649 aaKnown RBP11.64□□□□□ -0.55
CCDC88B-209ENST00000494080 C4orf26Q17RF5 130 aa11.64□□□□□ -0.55
CCDC88B-209ENST00000494080 H3BQ85 93 aa11.64□□□□□ -0.55
CCDC88B-209ENST00000494080 CCKP06307 115 aa11.64□□□□□ -0.55
CCDC88B-209ENST00000494080 FREM2Q5SZK8 3169 aa11.64□□□□□ -0.55
CCDC88B-209ENST00000494080 C1orf195Q5TG92 126 aa11.63□□□□□ -0.55
CCDC88B-209ENST00000494080 Q6ZQY7 126 aa11.63□□□□□ -0.55
CCDC88B-209ENST00000494080 COX7BP24311 80 aa11.62□□□□□ -0.55
CCDC88B-209ENST00000494080 XAGE1AQ9HD64 81 aa11.62□□□□□ -0.55
CCDC88B-209ENST00000494080 BPY2O14599 106 aa11.62□□□□□ -0.55
CCDC88B-209ENST00000494080 IGHV4-30-4P0DP06 118 aa11.62□□□□□ -0.55
CCDC88B-209ENST00000494080 FAM19A1Q7Z5A9 133 aa11.61□□□□□ -0.55
CCDC88B-209ENST00000494080 IGKV2-24A0A0C4DH68 120 aa11.61□□□□□ -0.55
CCDC88B-209ENST00000494080 LINC00959A0A1B0GUT2 108 aa11.6□□□□□ -0.55
CCDC88B-209ENST00000494080 SMIM26A0A096LP01 95 aa11.6□□□□□ -0.55
CCDC88B-209ENST00000494080 REV3LO60673 3130 aa11.6□□□□□ -0.55
CCDC88B-209ENST00000494080 LINC00337Q8N6G1 96 aa11.59□□□□□ -0.55
CCDC88B-209ENST00000494080 CRYGAP11844 174 aa11.59□□□□□ -0.55
CCDC88B-209ENST00000494080 NDUFS5O43920 106 aa11.59□□□□□ -0.55
CCDC88B-209ENST00000494080 PRR3P79522 188 aaKnown RBP11.58□□□□□ -0.56
CCDC88B-209ENST00000494080 KPRPQ5T749 579 aaPredicted RBP11.57□□□□□ -0.56
CCDC88B-209ENST00000494080 C16orf95Q9H693 158 aa11.57□□□□□ -0.56
CCDC88B-209ENST00000494080 IGLV4-60A0A075B6I1 120 aa11.57□□□□□ -0.56
CCDC88B-209ENST00000494080 TRAV7A0A075B6U4 112 aa11.57□□□□□ -0.56
CCDC88B-209ENST00000494080 NDUFC1O43677 76 aa11.57□□□□□ -0.56
CCDC88B-209ENST00000494080 BEAN1Q3B7T3 259 aa11.56□□□□□ -0.56
CCDC88B-209ENST00000494080 SERP1Q9Y6X1 66 aa11.56□□□□□ -0.56
CCDC88B-209ENST00000494080 NTM-AS1Q6ZSK4 140 aa11.56□□□□□ -0.56
CCDC88B-209ENST00000494080 Q9UF83 564 aa11.56□□□□□ -0.56
CCDC88B-209ENST00000494080 SOSTDC1Q6X4U4 206 aa11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 FAM19A4Q96LR4 140 aa11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 FAM218AQ96MZ4 157 aa11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 A0A096LNI7 61 aa11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 RPS28P62857 69 aaKnown RBP11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 CD164L2Q6UWJ8 174 aa11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 RETNQ9HD89 108 aa11.55□□□□□ -0.56
CCDC88B-209ENST00000494080 Q8N814 137 aa11.54□□□□□ -0.56
CCDC88B-209ENST00000494080 MP68P56378 58 aa11.54□□□□□ -0.56
CCDC88B-209ENST00000494080 FHL2Q14192 279 aa11.54□□□□□ -0.56
CCDC88B-209ENST00000494080 C11orf72Q8NBR9 251 aa11.52□□□□□ -0.56
CCDC88B-209ENST00000494080 IGLV5-39A0A0G2JS06 123 aa11.52□□□□□ -0.57
CCDC88B-209ENST00000494080 LITAFQ99732 161 aa11.52□□□□□ -0.57
CCDC88B-209ENST00000494080 C3orf84H3BNL1 204 aa11.52□□□□□ -0.57
CCDC88B-209ENST00000494080 LELP1Q5T871 98 aa11.52□□□□□ -0.57
CCDC88B-209ENST00000494080 HIGD2AQ9BW72 106 aa11.52□□□□□ -0.57
CCDC88B-209ENST00000494080 PRO0628Q9UI54 55 aa11.51□□□□□ -0.57
CCDC88B-209ENST00000494080 FAM19A3Q7Z5A8 133 aa11.51□□□□□ -0.57
CCDC88B-209ENST00000494080 ATP5EP56381 51 aaPredicted RBP11.5□□□□□ -0.57
CCDC88B-209ENST00000494080 NANOS2P60321 138 aaKnown RBP11.5□□□□□ -0.57
CCDC88B-209ENST00000494080 SPTBN5Q9NRC6 3674 aaKnown RBP11.5□□□□□ -0.57
CCDC88B-209ENST00000494080 SMCR5Q8TEV8 140 aa11.5□□□□□ -0.57
CCDC88B-209ENST00000494080 ADGRG4Q8IZF6 3080 aa11.5□□□□□ -0.57
CCDC88B-209ENST00000494080 UBE2AP49459 152 aa11.49□□□□□ -0.57
CCDC88B-209ENST00000494080 Q8N3U1 123 aa11.49□□□□□ -0.57
CCDC88B-209ENST00000494080 A0A087WZ39 114 aa11.49□□□□□ -0.57
CCDC88B-209ENST00000494080 C9orf116Q5BN46 136 aaPredicted RBP11.49□□□□□ -0.57
CCDC88B-209ENST00000494080 SPTSSBQ8NFR3 76 aa11.49□□□□□ -0.57
CCDC88B-209ENST00000494080 A0A0J9YWU9 116 aa11.48□□□□□ -0.57
CCDC88B-209ENST00000494080 Q8IZM0 81 aa11.48□□□□□ -0.57
CCDC88B-209ENST00000494080 EIF4EBP3O60516 100 aaPredicted RBP11.48□□□□□ -0.57
CCDC88B-209ENST00000494080 KLK9Q2XQG4 91 aa11.48□□□□□ -0.57
CCDC88B-209ENST00000494080 PRR4Q16378 134 aa11.47□□□□□ -0.57
CCDC88B-209ENST00000494080 DMXL2Q8TDJ6 3036 aa11.46□□□□□ -0.57
CCDC88B-209ENST00000494080 ATMQ13315 3056 aa11.46□□□□□ -0.57
CCDC88B-209ENST00000494080 FSHBP01225 129 aa11.46□□□□□ -0.57
CCDC88B-209ENST00000494080 LRCOL1A6NCL2 159 aa11.46□□□□□ -0.58
CCDC88B-209ENST00000494080 MRPL55Q7Z7F7 128 aaKnown RBP11.45□□□□□ -0.58
CCDC88B-209ENST00000494080 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.45□□□□□ -0.58
CCDC88B-209ENST00000494080 SYCNQ0VAF6 134 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms