RNA–Protein interactions for RNA: ENST00000491075.1

CLIP2-208, Transcript of CAP-Gly domain containing linker protein 2, human

TSL 1 (best)

Gene CLIP2, Length 551 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLIP2-208	ENST00000491075	ZC2HC1B	Q5TFG8	222 aa		12.01	□□□□□ -0.49
CLIP2-208	ENST00000491075	LINC00304	Q8N9R0	145 aa		12.01	□□□□□ -0.49
CLIP2-208	ENST00000491075	VCX2	Q9H322	139 aa		12.01	□□□□□ -0.49
CLIP2-208	ENST00000491075	ANAPC11	Q9NYG5	84 aa		12.01	□□□□□ -0.49
CLIP2-208	ENST00000491075	FAM229B	Q4G0N7	80 aa		12	□□□□□ -0.49
CLIP2-208	ENST00000491075	FAM19A3	Q7Z5A8	133 aa		12	□□□□□ -0.49
CLIP2-208	ENST00000491075	RPL37AP8	A6NKH3	93 aa		11.99	□□□□□ -0.49
CLIP2-208	ENST00000491075	PRSS47	A8MTI9	375 aa		11.99	□□□□□ -0.49
CLIP2-208	ENST00000491075	NPS	P0C0P6	89 aa		11.99	□□□□□ -0.49
CLIP2-208	ENST00000491075	C2orf66	Q6UXQ4	117 aa		11.99	□□□□□ -0.49
CLIP2-208	ENST00000491075	LINC00167	Q96N53	147 aa		11.99	□□□□□ -0.49
CLIP2-208	ENST00000491075	CXCL5	P42830	114 aa		11.98	□□□□□ -0.49
CLIP2-208	ENST00000491075	ATP5L2	Q7Z4Y8	100 aa		11.98	□□□□□ -0.49
CLIP2-208	ENST00000491075	MAP1LC3A	Q9H492	121 aa		11.98	□□□□□ -0.49
CLIP2-208	ENST00000491075	LAMTOR2	Q9Y2Q5	125 aa		11.98	□□□□□ -0.49
CLIP2-208	ENST00000491075	IGLV7-46	A0A075B6I9	117 aa		11.97	□□□□□ -0.49
CLIP2-208	ENST00000491075	HERVK_113	P63121	156 aa		11.97	□□□□□ -0.49
CLIP2-208	ENST00000491075	SEC11A	P67812	179 aa		11.97	□□□□□ -0.49
CLIP2-208	ENST00000491075	AKAP14	Q86UN6	197 aa		11.97	□□□□□ -0.49
CLIP2-208	ENST00000491075	KRTAP13-1	Q8IUC0	172 aa		11.97	□□□□□ -0.49
CLIP2-208	ENST00000491075	LOC389332	A0A1B0GUA5	103 aa		11.96	□□□□□ -0.49
CLIP2-208	ENST00000491075	UBE2A	P49459	152 aa		11.96	□□□□□ -0.49
CLIP2-208	ENST00000491075	CTAG1A	P78358	180 aa		11.96	□□□□□ -0.49
CLIP2-208	ENST00000491075	CDKN2A-AS1	Q9UH64	79 aa		11.96	□□□□□ -0.49
CLIP2-208	ENST00000491075		C9JQL5	133 aa		11.95	□□□□□ -0.5
CLIP2-208	ENST00000491075	GAGE10	A6NGK3	116 aa		11.94	□□□□□ -0.5
CLIP2-208	ENST00000491075	ORMDL2	Q53FV1	153 aa		11.94	□□□□□ -0.5
CLIP2-208	ENST00000491075		Q8N8P6	123 aa		11.94	□□□□□ -0.5
CLIP2-208	ENST00000491075	IGKV2D-26	A0A0A0MRZ7	120 aa		11.93	□□□□□ -0.5
CLIP2-208	ENST00000491075	IGIP	A6NJ69	53 aa		11.93	□□□□□ -0.5
CLIP2-208	ENST00000491075	PAPPA-AS1	Q5QFB9	102 aa		11.93	□□□□□ -0.5
CLIP2-208	ENST00000491075	GEMIN7	Q9H840	131 aa	Known RBP	11.93	□□□□□ -0.5
CLIP2-208	ENST00000491075	IGLV5-37	A0A075B6J1	123 aa		11.92	□□□□□ -0.5
CLIP2-208	ENST00000491075		K7EMI3	77 aa		11.91	□□□□□ -0.5
CLIP2-208	ENST00000491075	PNRC1	Q12796	327 aa	Predicted RBP	11.91	□□□□□ -0.5
CLIP2-208	ENST00000491075	NKAPP1	Q8N9T2	125 aa		11.91	□□□□□ -0.5
CLIP2-208	ENST00000491075	PEA15	Q15121	130 aa		11.9	□□□□□ -0.5
CLIP2-208	ENST00000491075	SRSF3	P84103	164 aa	Known RBP	11.88	□□□□□ -0.51
CLIP2-208	ENST00000491075	SMIM1	B2RUZ4	78 aa		11.87	□□□□□ -0.51
CLIP2-208	ENST00000491075	PPDPF	Q9H3Y8	114 aa		11.87	□□□□□ -0.51
CLIP2-208	ENST00000491075	PDZD11	Q5EBL8	140 aa		11.86	□□□□□ -0.51
CLIP2-208	ENST00000491075	COX7B2	Q8TF08	81 aa		11.86	□□□□□ -0.51
CLIP2-208	ENST00000491075	TIMM17A	Q99595	171 aa		11.86	□□□□□ -0.51
CLIP2-208	ENST00000491075	IGKV2-28	A0A075B6P5	120 aa		11.85	□□□□□ -0.51
CLIP2-208	ENST00000491075	IGKV2D-28	P01615	120 aa		11.85	□□□□□ -0.51
CLIP2-208	ENST00000491075	G0S2	P27469	103 aa		11.85	□□□□□ -0.51
CLIP2-208	ENST00000491075	NXT2	Q9NPJ8	142 aa	Known RBP	11.85	□□□□□ -0.51
CLIP2-208	ENST00000491075	PRLH	P81277	87 aa		11.83	□□□□□ -0.52
CLIP2-208	ENST00000491075	RAB5B	P61020	215 aa		11.82	□□□□□ -0.52
CLIP2-208	ENST00000491075	TOMM6	Q96B49	74 aa		11.82	□□□□□ -0.52
CLIP2-208	ENST00000491075	FAM19A1	Q7Z5A9	133 aa		11.81	□□□□□ -0.52
CLIP2-208	ENST00000491075	hCG_2014768	A0A024R1R8	64 aa		11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	IGLV5-45	A0A087WSX0	123 aa		11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	TINCR	A0A1B0GVN0	87 aa		11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	SCO1	O75880	301 aa		11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	SPAG11A	Q6PDA7	123 aa		11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	FP248	Q71RG6	208 aa	Predicted RBP	11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	TMEM126A	Q9H061	195 aa		11.8	□□□□□ -0.52
CLIP2-208	ENST00000491075	ERAS	Q7Z444	233 aa		11.79	□□□□□ -0.52
CLIP2-208	ENST00000491075	LINC01547	P58512	204 aa	Predicted RBP	11.78	□□□□□ -0.52
CLIP2-208	ENST00000491075	C3orf22	Q8N5N4	141 aa		11.78	□□□□□ -0.52
CLIP2-208	ENST00000491075	LCE2D	Q5TA82	110 aa	Predicted RBP	11.77	□□□□□ -0.53
CLIP2-208	ENST00000491075	PLEKHB2	Q96CS7	222 aa		11.77	□□□□□ -0.53
CLIP2-208	ENST00000491075	TMEM238	C9JI98	176 aa		11.76	□□□□□ -0.53
CLIP2-208	ENST00000491075	ATP5L	O75964	103 aa		11.76	□□□□□ -0.53
CLIP2-208	ENST00000491075	SPINK8	P0C7L1	97 aa		11.76	□□□□□ -0.53
CLIP2-208	ENST00000491075	LINC00337	Q8N6G1	96 aa		11.76	□□□□□ -0.53
CLIP2-208	ENST00000491075	SCGB3A1	Q96QR1	104 aa		11.76	□□□□□ -0.53
CLIP2-208	ENST00000491075	ASB16-AS1	Q495Z4	193 aa		11.75	□□□□□ -0.53
CLIP2-208	ENST00000491075	GNB1L	Q9BYB4	327 aa		11.75	□□□□□ -0.53
CLIP2-208	ENST00000491075	VPREB1	P12018	145 aa		11.74	□□□□□ -0.53
CLIP2-208	ENST00000491075	CBLN2	Q8IUK8	224 aa		11.74	□□□□□ -0.53
CLIP2-208	ENST00000491075		M0R378	163 aa		11.73	□□□□□ -0.53
CLIP2-208	ENST00000491075	PFN2	P35080	140 aa		11.72	□□□□□ -0.53
CLIP2-208	ENST00000491075	KRTAP13-3	Q3SY46	172 aa		11.72	□□□□□ -0.53
CLIP2-208	ENST00000491075	ANAPC16	Q96DE5	110 aa		11.72	□□□□□ -0.53
CLIP2-208	ENST00000491075	MRPL18	Q9H0U6	180 aa	Known RBP	11.72	□□□□□ -0.53
CLIP2-208	ENST00000491075	LINC01549	A6NIU2	74 aa		11.71	□□□□□ -0.53
CLIP2-208	ENST00000491075	MT-ND4L	P03901	98 aa		11.71	□□□□□ -0.53
CLIP2-208	ENST00000491075	ADCYAP1	P18509	176 aa		11.71	□□□□□ -0.53
CLIP2-208	ENST00000491075	RPL24	P83731	157 aa	Known RBP	11.71	□□□□□ -0.53
CLIP2-208	ENST00000491075	CST9L	Q9H4G1	147 aa		11.71	□□□□□ -0.53
CLIP2-208	ENST00000491075	SND1-IT1	Q9HBX3	110 aa		11.71	□□□□□ -0.53
CLIP2-208	ENST00000491075		H3BRM9	83 aa		11.7	□□□□□ -0.54
CLIP2-208	ENST00000491075	C4orf48	Q5BLP8	95 aa		11.7	□□□□□ -0.54
CLIP2-208	ENST00000491075	HIGD2A	Q9BW72	106 aa		11.7	□□□□□ -0.54
CLIP2-208	ENST00000491075	SPRR4	Q96PI1	79 aa		11.68	□□□□□ -0.54
CLIP2-208	ENST00000491075	CRCT1	Q9UGL9	99 aa		11.68	□□□□□ -0.54
CLIP2-208	ENST00000491075	SEC61B	P60468	96 aa	Known RBP	11.67	□□□□□ -0.54
CLIP2-208	ENST00000491075	PMVK	Q15126	192 aa		11.67	□□□□□ -0.54
CLIP2-208	ENST00000491075	ERG28	Q9UKR5	140 aa		11.67	□□□□□ -0.54
CLIP2-208	ENST00000491075	COX17	Q14061	63 aa		11.66	□□□□□ -0.54
CLIP2-208	ENST00000491075	ZNF706	Q9Y5V0	76 aa	Predicted RBP	11.66	□□□□□ -0.54
CLIP2-208	ENST00000491075	FSIP2	Q5CZC0	6907 aa		11.66	□□□□□ -0.54
CLIP2-208	ENST00000491075	IGLV5-39	A0A0G2JS06	123 aa		11.65	□□□□□ -0.54
CLIP2-208	ENST00000491075	KRTAP4-1	Q9BYQ7	146 aa		11.65	□□□□□ -0.54
CLIP2-208	ENST00000491075	RAB14	P61106	215 aa		11.64	□□□□□ -0.55
CLIP2-208	ENST00000491075	KIAA1644	Q3SXP7	199 aa		11.64	□□□□□ -0.55
CLIP2-208	ENST00000491075		Q8NBF4	154 aa		11.63	□□□□□ -0.55
CLIP2-208	ENST00000491075		Q8NDZ9	215 aa		11.63	□□□□□ -0.55

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