RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 IGLV4-69A0A075B6H9 119 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 IGLV5-45A0A087WSX0 123 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 SYS1-DBNDD2H3BUS1 97 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 PLNP26678 52 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 KRTDAPP60985 99 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 SPAG11BQ08648 103 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 ODF1Q14990 250 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 PET117Q6UWS5 81 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 HIST3H2BBQ8N257 126 aa6.73□□□□□ -1.33
SKA1-204ENST00000488454 C20orf202A1L168 122 aa6.72□□□□□ -1.33
SKA1-204ENST00000488454 C11orf86A6NJI1 115 aa6.72□□□□□ -1.33
SKA1-204ENST00000488454 C16orf90A8MZG2 172 aa6.72□□□□□ -1.33
SKA1-204ENST00000488454 DPM2O94777 84 aa6.72□□□□□ -1.33
SKA1-204ENST00000488454 ZNF22P17026 224 aaPredicted RBP6.72□□□□□ -1.33
SKA1-204ENST00000488454 FUSP35637 526 aaKnown RBP eCLIP6.72□□□□□ -1.33
SKA1-204ENST00000488454 C6orf226Q5I0X4 101 aa6.72□□□□□ -1.33
SKA1-204ENST00000488454 TOMM7Q9P0U1 55 aa6.72□□□□□ -1.33
SKA1-204ENST00000488454 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 F8WDY8 70 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 SPINK8P0C7L1 97 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 C3orf79P0CE67 100 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 GCSHP23434 173 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 CKS1BP61024 79 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 CNBPP62633 177 aaKnown RBP6.71□□□□□ -1.34
SKA1-204ENST00000488454 SYCNQ0VAF6 134 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 LINC00526Q96FQ7 95 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 C2orf48Q96LS8 159 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 CAMK2N2Q96S95 79 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 HIST1H2BLQ99880 126 aa6.71□□□□□ -1.34
SKA1-204ENST00000488454 TMA7Q9Y2S6 64 aaKnown RBP6.71□□□□□ -1.34
SKA1-204ENST00000488454 SMIM1B2RUZ4 78 aa6.7□□□□□ -1.34
SKA1-204ENST00000488454 IGKCP01834 107 aa6.7□□□□□ -1.34
SKA1-204ENST00000488454 PMCHL2Q9BQD1 86 aa6.7□□□□□ -1.34
SKA1-204ENST00000488454 KRTAP4-11Q9BYQ6 195 aa6.7□□□□□ -1.34
SKA1-204ENST00000488454 DNAH11Q96DT5 4516 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 NDUFA1O15239 70 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 AKR1D1P51857 326 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 HERVK_113P61574 105 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 RNF151Q2KHN1 245 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 Q8IZM0 81 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 COX7B2Q8TF08 81 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 CARD19Q96LW7 228 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 KRTAP4-2Q9BYR5 136 aa6.69□□□□□ -1.34
SKA1-204ENST00000488454 SLPIP03973 132 aa6.68□□□□□ -1.34
SKA1-204ENST00000488454 C21orf62-AS1Q17RA5 79 aa6.68□□□□□ -1.34
SKA1-204ENST00000488454 LINC01545Q5VT33 79 aa6.68□□□□□ -1.34
SKA1-204ENST00000488454 C9orf163Q8N9P6 203 aa6.68□□□□□ -1.34
SKA1-204ENST00000488454 PKIGQ9Y2B9 76 aa6.68□□□□□ -1.34
SKA1-204ENST00000488454 TMEM223A0PJW6 202 aa6.67□□□□□ -1.34
SKA1-204ENST00000488454 CXCL5P42830 114 aa6.67□□□□□ -1.34
SKA1-204ENST00000488454 KIAA0087Q14695 138 aa6.67□□□□□ -1.34
SKA1-204ENST00000488454 Q6ZRU5 148 aa6.67□□□□□ -1.34
SKA1-204ENST00000488454 PKD1P98161 4303 aa6.67□□□□□ -1.34
SKA1-204ENST00000488454 IGLV5-39A0A0G2JS06 123 aa6.66□□□□□ -1.34
SKA1-204ENST00000488454 LINC01620Q4KN68 170 aa6.66□□□□□ -1.34
SKA1-204ENST00000488454 C2orf82Q6UX34 121 aa6.66□□□□□ -1.34
SKA1-204ENST00000488454 UNQ6190/PRO20217Q6UXQ8 127 aa6.66□□□□□ -1.34
SKA1-204ENST00000488454 TRBV30A0A0K0K1B3 111 aa6.65□□□□□ -1.34
SKA1-204ENST00000488454 SFTA2Q6UW10 78 aa6.65□□□□□ -1.34
SKA1-204ENST00000488454 DPH3Q96FX2 82 aa6.65□□□□□ -1.34
SKA1-204ENST00000488454 SCGB1D1O95968 90 aa6.64□□□□□ -1.35
SKA1-204ENST00000488454 KRTAP10-1P60331 282 aa6.64□□□□□ -1.35
SKA1-204ENST00000488454 C10orf25Q5T742 122 aa6.64□□□□□ -1.35
SKA1-204ENST00000488454 PLEKHB2Q96CS7 222 aa6.64□□□□□ -1.35
SKA1-204ENST00000488454 LOC107984640A0A0U1RRK4 108 aa6.63□□□□□ -1.35
SKA1-204ENST00000488454 LEPROTO15243 131 aa6.63□□□□□ -1.35
SKA1-204ENST00000488454 LGALS3P17931 250 aaKnown RBP6.63□□□□□ -1.35
SKA1-204ENST00000488454 DYNC1H1Q14204 4646 aaKnown RBP6.63□□□□□ -1.35
SKA1-204ENST00000488454 SDIM1Q6ZPB5 146 aa6.63□□□□□ -1.35
SKA1-204ENST00000488454 C6orf48Q9UBA6 75 aa6.63□□□□□ -1.35
SKA1-204ENST00000488454 DNAH5Q8TE73 4624 aa6.63□□□□□ -1.35
SKA1-204ENST00000488454 HSBP1L1C9JCN9 74 aa6.62□□□□□ -1.35
SKA1-204ENST00000488454 RPL18AQ02543 176 aaKnown RBP6.62□□□□□ -1.35
SKA1-204ENST00000488454 GAGE2BQ13066 116 aa6.62□□□□□ -1.35
SKA1-204ENST00000488454 ATOH7Q8N100 152 aa6.62□□□□□ -1.35
SKA1-204ENST00000488454 STPG4Q8N801 248 aa6.62□□□□□ -1.35
SKA1-204ENST00000488454 LINC00474Q9P2X8 69 aa6.62□□□□□ -1.35
SKA1-204ENST00000488454 HECTD4Q9Y4D8 3996 aa6.61□□□□□ -1.35
SKA1-204ENST00000488454 MYMXA0A1B0GTQ4 84 aa6.61□□□□□ -1.35
SKA1-204ENST00000488454 E9PLD3 99 aa6.61□□□□□ -1.35
SKA1-204ENST00000488454 J3QQQ9 107 aa6.61□□□□□ -1.35
SKA1-204ENST00000488454 NDUFA12Q9UI09 145 aa6.61□□□□□ -1.35
SKA1-204ENST00000488454 IGKV2-24A0A0C4DH68 120 aa6.6□□□□□ -1.35
SKA1-204ENST00000488454 LINC00587B1AMM8 73 aa6.6□□□□□ -1.35
SKA1-204ENST00000488454 NDUFC2-KCTD14E9PQ53 114 aa6.6□□□□□ -1.35
SKA1-204ENST00000488454 TLX1NBP0CAT3 122 aa6.6□□□□□ -1.35
SKA1-204ENST00000488454 NMUP48645 174 aa6.6□□□□□ -1.35
SKA1-204ENST00000488454 HERV-K104P63124 156 aa6.6□□□□□ -1.35
SKA1-204ENST00000488454 C9orf116Q5BN46 136 aaPredicted RBP6.6□□□□□ -1.35
SKA1-204ENST00000488454 ZNF625Q96I27 306 aaPredicted RBP6.6□□□□□ -1.35
SKA1-204ENST00000488454 HERC2O95714 4834 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 PFN2P35080 140 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 PTTG1IPP53801 180 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 MAJINQ3KP22 176 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 GAGE2EQ4V326 116 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 GAGE2DQ9UEU5 116 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 PKHD1P08F94 4074 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 LRP1BQ9NZR2 4599 aa6.59□□□□□ -1.35
SKA1-204ENST00000488454 A0A096LNI7 61 aa6.58□□□□□ -1.36
SKA1-204ENST00000488454 LINC00158P58513 81 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms