RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 PMVKQ15126 192 aa7.73□□□□□ -1.17
SDC3-204ENST00000487984 TEX43Q6ZNM6 134 aa7.73□□□□□ -1.17
SDC3-204ENST00000487984 LINC00173Q6ZV60 143 aa7.73□□□□□ -1.17
SDC3-204ENST00000487984 STPG4Q8N801 248 aa7.73□□□□□ -1.17
SDC3-204ENST00000487984 CARD19Q96LW7 228 aa7.73□□□□□ -1.17
SDC3-204ENST00000487984 C2orf88Q9BSF0 95 aa7.73□□□□□ -1.17
SDC3-204ENST00000487984 IGLV4-3A0A075B6K6 122 aa7.72□□□□□ -1.17
SDC3-204ENST00000487984 JOSD1Q15040 202 aaPredicted RBP7.72□□□□□ -1.17
SDC3-204ENST00000487984 RNASE13Q5GAN3 156 aaKnown RBP7.72□□□□□ -1.17
SDC3-204ENST00000487984 ZNF561-AS1K7EIQ3 104 aa7.71□□□□□ -1.18
SDC3-204ENST00000487984 PRR3P79522 188 aaKnown RBP7.71□□□□□ -1.18
SDC3-204ENST00000487984 LINC00474Q9P2X8 69 aa7.71□□□□□ -1.18
SDC3-204ENST00000487984 PLA2G2DQ9UNK4 145 aa7.71□□□□□ -1.18
SDC3-204ENST00000487984 TRAV13-1A0A0B4J241 112 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 SMIM6P0DI80 62 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 PLNP26678 52 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 SEC11AP67812 179 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 SYCNQ0VAF6 134 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 LINC01545Q5VT33 79 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 Q6ZUT4 128 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 AMELXQ99217 191 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 CST9LQ9H4G1 147 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 PKIGQ9Y2B9 76 aa7.7□□□□□ -1.18
SDC3-204ENST00000487984 CHTOPQ9Y3Y2 248 aaKnown RBP7.7□□□□□ -1.18
SDC3-204ENST00000487984 UBR4Q5T4S7 5183 aa7.69□□□□□ -1.18
SDC3-204ENST00000487984 F8VRH5 84 aa7.69□□□□□ -1.18
SDC3-204ENST00000487984 COX7A2LO14548 114 aa7.69□□□□□ -1.18
SDC3-204ENST00000487984 MALP21145 153 aa7.69□□□□□ -1.18
SDC3-204ENST00000487984 IGLV4-69A0A075B6H9 119 aa7.68□□□□□ -1.18
SDC3-204ENST00000487984 DPM2O94777 84 aa7.68□□□□□ -1.18
SDC3-204ENST00000487984 ODF1Q14990 250 aa7.68□□□□□ -1.18
SDC3-204ENST00000487984 OPRPNQ99935 248 aaPredicted RBP7.68□□□□□ -1.18
SDC3-204ENST00000487984 TNXBP22105 4242 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 HSBP1L1C9JCN9 74 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 IGKCP01834 107 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 PTTG1IPP53801 180 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 S100A12P80511 92 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 PYY3Q5JQD4 70 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 C5orf38Q86SI9 138 aa7.67□□□□□ -1.18
SDC3-204ENST00000487984 MRPL35Q9NZE8 188 aaKnown RBP7.67□□□□□ -1.18
SDC3-204ENST00000487984 LOC107984640A0A0U1RRK4 108 aa7.66□□□□□ -1.18
SDC3-204ENST00000487984 GAGE2BQ13066 116 aa7.66□□□□□ -1.18
SDC3-204ENST00000487984 FAM104AQ969W3 186 aa7.66□□□□□ -1.18
SDC3-204ENST00000487984 CAMK2N2Q96S95 79 aa7.66□□□□□ -1.18
SDC3-204ENST00000487984 GEMIN7Q9H840 131 aaKnown RBP7.66□□□□□ -1.18
SDC3-204ENST00000487984 TINCRA0A1B0GVN0 87 aa7.65□□□□□ -1.18
SDC3-204ENST00000487984 IGLC3P0DOY3 106 aa7.65□□□□□ -1.18
SDC3-204ENST00000487984 HERVK_113P63121 156 aa7.65□□□□□ -1.18
SDC3-204ENST00000487984 C2orf48Q96LS8 159 aa7.65□□□□□ -1.18
SDC3-204ENST00000487984 APOMO95445 188 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 UBE2D1P51668 147 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 HERVK_113P61574 105 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 SPAG11BQ08648 103 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 FAM19A3Q7Z5A8 133 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 PMCHL2Q9BQD1 86 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 VAMP8Q9BV40 100 aa7.64□□□□□ -1.19
SDC3-204ENST00000487984 A0A0J9YXV3 536 aa7.63□□□□□ -1.19
SDC3-204ENST00000487984 A0A1W2PNN7 141 aa7.63□□□□□ -1.19
SDC3-204ENST00000487984 H3BRM9 83 aa7.63□□□□□ -1.19
SDC3-204ENST00000487984 ZC2HC1BQ5TFG8 222 aa7.63□□□□□ -1.19
SDC3-204ENST00000487984 LINC01600Q96MT4 127 aa7.63□□□□□ -1.19
SDC3-204ENST00000487984 RPL18AQ02543 176 aaKnown RBP7.62□□□□□ -1.19
SDC3-204ENST00000487984 TMEM170BQ5T4T1 132 aa7.62□□□□□ -1.19
SDC3-204ENST00000487984 SPINK6Q6UWN8 80 aa7.62□□□□□ -1.19
SDC3-204ENST00000487984 Q6ZRP5 223 aa7.62□□□□□ -1.19
SDC3-204ENST00000487984 C12orf57Q99622 126 aa7.62□□□□□ -1.19
SDC3-204ENST00000487984 IGHV3OR16-9A0A0B4J2B5 98 aa7.61□□□□□ -1.19
SDC3-204ENST00000487984 C11orf86A6NJI1 115 aa7.61□□□□□ -1.19
SDC3-204ENST00000487984 LINC00242Q5T6M2 205 aa7.61□□□□□ -1.19
SDC3-204ENST00000487984 ATOH7Q8N100 152 aa7.61□□□□□ -1.19
SDC3-204ENST00000487984 LINC00469Q8N7U9 141 aa7.61□□□□□ -1.19
SDC3-204ENST00000487984 ORAOV1Q8WV07 137 aa7.61□□□□□ -1.19
SDC3-204ENST00000487984 SRSF9Q13242 221 aaKnown RBP eCLIP7.6□□□□□ -1.19
SDC3-204ENST00000487984 RNF151Q2KHN1 245 aa7.6□□□□□ -1.19
SDC3-204ENST00000487984 C9orf116Q5BN46 136 aaPredicted RBP7.6□□□□□ -1.19
SDC3-204ENST00000487984 LINC00518Q8N0U6 118 aa7.6□□□□□ -1.19
SDC3-204ENST00000487984 IGLV5-45A0A087WSX0 123 aa7.59□□□□□ -1.19
SDC3-204ENST00000487984 ZNF22P17026 224 aaPredicted RBP7.59□□□□□ -1.19
SDC3-204ENST00000487984 REG3GQ6UW15 175 aa7.59□□□□□ -1.19
SDC3-204ENST00000487984 SPATA45Q537H7 98 aa7.58□□□□□ -1.2
SDC3-204ENST00000487984 C10orf25Q5T742 122 aa7.58□□□□□ -1.2
SDC3-204ENST00000487984 LINC01561Q8N1V8 128 aa7.58□□□□□ -1.2
SDC3-204ENST00000487984 PAM16Q9Y3D7 125 aa7.58□□□□□ -1.2
SDC3-204ENST00000487984 F8WDY8 70 aa7.57□□□□□ -1.2
SDC3-204ENST00000487984 NDUFA1O15239 70 aa7.57□□□□□ -1.2
SDC3-204ENST00000487984 UNQ6190/PRO20217Q6UXQ8 127 aa7.57□□□□□ -1.2
SDC3-204ENST00000487984 PHF5AQ7RTV0 110 aaKnown RBP7.57□□□□□ -1.2
SDC3-204ENST00000487984 PLEKHB2Q96CS7 222 aa7.57□□□□□ -1.2
SDC3-204ENST00000487984 CDKN2A-AS1Q9UH64 79 aa7.57□□□□□ -1.2
SDC3-204ENST00000487984 PSORS1C2Q9UIG4 136 aa7.57□□□□□ -1.2
SDC3-204ENST00000487984 A0A087WZ39 114 aa7.56□□□□□ -1.2
SDC3-204ENST00000487984 TMEM223A0PJW6 202 aa7.56□□□□□ -1.2
SDC3-204ENST00000487984 E9PLD3 99 aa7.56□□□□□ -1.2
SDC3-204ENST00000487984 KRTAP10-8P60410 259 aa7.56□□□□□ -1.2
SDC3-204ENST00000487984 C6orf48Q9UBA6 75 aa7.56□□□□□ -1.2
SDC3-204ENST00000487984 LEPROTO15243 131 aa7.55□□□□□ -1.2
SDC3-204ENST00000487984 KIAA0087Q14695 138 aa7.55□□□□□ -1.2
SDC3-204ENST00000487984 LRP2P98164 4655 aa7.55□□□□□ -1.2
SDC3-204ENST00000487984 FAM168BA1KXE4 195 aa7.54□□□□□ -1.2
SDC3-204ENST00000487984 TSTD3H0UI37 97 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms