RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 LYPD5Q6UWN5 251 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 Q6ZRN7 208 aaPredicted RBP1.6□□□□□ -2.15
USP48-209ENST00000487880 ZNF826PQ6ZT77 177 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 PRR15Q8IV56 129 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 MUSTN1Q8IVN3 82 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 DYNAPQ8N1N2 210 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 SMCR5Q8TEV8 140 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 DSCR8Q96T75 97 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 CCL13Q99616 98 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 MRPL36Q9P0J6 103 aaKnown RBP1.6□□□□□ -2.15
USP48-209ENST00000487880 KLK9Q9UKQ9 250 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 UBE2D4Q9Y2X8 147 aa1.6□□□□□ -2.15
USP48-209ENST00000487880 H0YGX0 51 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 H7BZZ5 65 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 LYZL6O75951 148 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 ERC2-IT1O76042 136 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 DNAL4O96015 105 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 RNASE4P34096 147 aaKnown RBP1.59□□□□□ -2.15
USP48-209ENST00000487880 XCL1P47992 114 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 DAD1P61803 113 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 PMAIP1Q13794 54 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 CIRBPQ14011 172 aaKnown RBP1.59□□□□□ -2.15
USP48-209ENST00000487880 SPANXN1Q5VSR9 72 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 SFTA2Q6UW10 78 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 C3orf56Q8N813 242 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 FAM215AQ9Y5M1 114 aa1.59□□□□□ -2.15
USP48-209ENST00000487880 TNCP24821 2201 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 KNTC1P50748 2209 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 MYO7AQ13402 2215 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 DIDO1Q9BTC0 2240 aaKnown RBP1.58□□□□□ -2.16
USP48-209ENST00000487880 TRAV13-2A0A0B4J235 113 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 TRAV41A0A0B4J266 112 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 TRAV21A0A0B4J279 112 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 IGHV1-58A0A0C4DH39 117 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 IBA57-AS1B1ANH7 110 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 E7EUB6 86 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 JMJD7-PLA2G4BH0Y9G9 81 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 K7EIM0 57 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 BAALC-AS2P0C853 105 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 RPL28P46779 137 aaKnown RBP1.58□□□□□ -2.16
USP48-209ENST00000487880 FP248Q71RG6 208 aaPredicted RBP1.58□□□□□ -2.16
USP48-209ENST00000487880 GPHB5Q86YW7 130 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 C10orf105Q8TEF2 133 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 PKIGQ9Y2B9 76 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 PCNTO95613 3336 aa1.58□□□□□ -2.16
USP48-209ENST00000487880 FCGBPQ9Y6R7 5405 aaPredicted RBP1.57□□□□□ -2.16
USP48-209ENST00000487880 SRCAPQ6ZRS2 3230 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 MED12Q93074 2177 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 IGKV2-40A0A087WW87 121 aaPredicted RBP1.57□□□□□ -2.16
USP48-209ENST00000487880 H7C2G1 150 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 NDUFA1O15239 70 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 IGKV2D-40P01614 121 aaPredicted RBP1.57□□□□□ -2.16
USP48-209ENST00000487880 CCKP06307 115 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 BLCAPP62952 87 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 C10orf55Q5SWW7 151 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 VMO1Q7Z5L0 202 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 DYNLRB2Q8TF09 96 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 BRK1Q8WUW1 75 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 CLEC2BQ92478 149 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 GAFA1Q96PS6 74 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 CYSTM1Q9H1C7 97 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 KAAG1Q9UBP8 84 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 NDUFA12Q9UI09 145 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 C22orf24Q9Y442 160 aa1.57□□□□□ -2.16
USP48-209ENST00000487880 HMCN1Q96RW7 5635 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 FAM223BA6NKX1 122 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 M0R1W7 72 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 NDUFB3O43676 98 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 PDE6GP18545 87 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 S100A4P26447 101 aaKnown RBP1.56□□□□□ -2.16
USP48-209ENST00000487880 Q1T7F1 81 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 DEFB133Q30KQ1 61 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 Q6ZSA8 131 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 Q6ZTI0 123 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 C20orf197Q8N268 126 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 Q8TAT8 98 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 LINC00308Q8TCZ7 52 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 SPACA4Q8TDM5 124 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 RNASE6Q93091 150 aaKnown RBP1.56□□□□□ -2.16
USP48-209ENST00000487880 UBL5Q9BZL1 73 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 LINC00846Q9NV44 126 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 INTS1Q8N201 2190 aaKnown RBP1.56□□□□□ -2.16
USP48-209ENST00000487880 DSCAMO60469 2012 aa1.56□□□□□ -2.16
USP48-209ENST00000487880 DNAH12Q6ZR08 3092 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 IGKV3D-7A0A0C4DH55 119 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 TMEM256-PLSCR3K7ERE1 68 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 RNASE3P12724 160 aaKnown RBP1.55□□□□□ -2.16
USP48-209ENST00000487880 MIFP14174 115 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 RBM3P98179 157 aaKnown RBP1.55□□□□□ -2.16
USP48-209ENST00000487880 ESRGQ1W209 222 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 FAM223AQ8IWN6 122 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 Q8N2B8 174 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 DEFB119Q8N690 84 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 CNEP1R1Q8N9A8 125 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 LEAP2Q969E1 77 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 RPL39LQ96EH5 51 aaKnown RBP1.55□□□□□ -2.16
USP48-209ENST00000487880 ORMDL1Q9P0S3 153 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 ARFGEF3Q5TH69 2177 aa1.55□□□□□ -2.16
USP48-209ENST00000487880 MED13Q9UHV7 2174 aa1.55□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms