RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 STPG4Q8N801 248 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 CST9LQ9H4G1 147 aa5.19□□□□□ -1.58
USP40-216ENST00000485943 CHTOPQ9Y3Y2 248 aaKnown RBP5.19□□□□□ -1.58
USP40-216ENST00000485943 KRTAP9-7A8MTY7 169 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 PRYO14603 147 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 XGP55808 180 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 GAGE2EQ4V326 116 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 LINC01561Q8N1V8 128 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 CIRBP-AS1Q8TBR5 109 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 IFI27L1Q96BM0 104 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 GAGE2DQ9UEU5 116 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 CDKN2A-AS1Q9UH64 79 aa5.18□□□□□ -1.58
USP40-216ENST00000485943 TRBV30A0A0K0K1B3 111 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 LINC01546A6NGU7 62 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 SPINK8P0C7L1 97 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 CHTF8P0CG12 524 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 INAFM2P0DMQ5 153 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 FABP4P15090 132 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 HERVK_113P61574 105 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 PDZD11Q5EBL8 140 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 SDIM1Q6ZPB5 146 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 Q8IZM0 81 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 FAM19A2Q8N3H0 131 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 COX7B2Q8TF08 81 aa5.17□□□□□ -1.58
USP40-216ENST00000485943 MRPL35Q9NZE8 188 aaKnown RBP5.17□□□□□ -1.58
USP40-216ENST00000485943 PKHD1P08F94 4074 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 A0A087WYN8 130 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 A0A096LNI7 61 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 KRTAP4-8A0A0G2JLE6 195 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 F8VRH5 84 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 SCO1O75880 301 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 SERF1AO75920 110 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 UBE2BP63146 152 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 SFTA2Q6UW10 78 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 UNQ6190/PRO20217Q6UXQ8 127 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 Q6ZSA8 131 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 LINC00173Q6ZV60 143 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 MAP1LC3CQ9BXW4 147 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 FAT2Q9NYQ8 4349 aa5.16□□□□□ -1.58
USP40-216ENST00000485943 SLPIP03973 132 aa5.15□□□□□ -1.59
USP40-216ENST00000485943 PCP4P48539 62 aa5.15□□□□□ -1.59
USP40-216ENST00000485943 C2orf82Q6UX34 121 aa5.15□□□□□ -1.59
USP40-216ENST00000485943 SPACA4Q8TDM5 124 aa5.15□□□□□ -1.59
USP40-216ENST00000485943 PKD1P98161 4303 aa5.15□□□□□ -1.59
USP40-216ENST00000485943 COLCA2A8K830 154 aa5.14□□□□□ -1.59
USP40-216ENST00000485943 YPEL4Q96NS1 127 aa5.14□□□□□ -1.59
USP40-216ENST00000485943 TRAV12-1A0A0B4J245 112 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 NDUFC2-KCTD14E9PQ53 114 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 S100A6P06703 90 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 IGLC3P0DOY3 106 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 PLNP26678 52 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 MEIG1Q5JSS6 88 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 FAM19A5Q7Z5A7 132 aaPredicted RBP5.13□□□□□ -1.59
USP40-216ENST00000485943 FAM19A3Q7Z5A8 133 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 C6orf48Q9UBA6 75 aa5.13□□□□□ -1.59
USP40-216ENST00000485943 C20orf202A1L168 122 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 SMIM1B2RUZ4 78 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 ZNF22P17026 224 aaPredicted RBP5.12□□□□□ -1.59
USP40-216ENST00000485943 S100A2P29034 98 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 PFN2P35080 140 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 C9orf116Q5BN46 136 aaPredicted RBP5.12□□□□□ -1.59
USP40-216ENST00000485943 NKAPP1Q8N9T2 125 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 FAM104AQ969W3 186 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 URB1-AS1Q96HZ7 61 aa5.12□□□□□ -1.59
USP40-216ENST00000485943 C11orf86A6NJI1 115 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 LINC00587B1AMM8 73 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 DPM2O94777 84 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 LGALS3P17931 250 aaKnown RBP5.11□□□□□ -1.59
USP40-216ENST00000485943 LINC00158P58513 81 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 C10orf25Q5T742 122 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 ZNF625Q96I27 306 aaPredicted RBP5.11□□□□□ -1.59
USP40-216ENST00000485943 PLAC8Q9NZF1 115 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 DNAH11Q96DT5 4516 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 KIAA1109Q2LD37 5005 aa5.11□□□□□ -1.59
USP40-216ENST00000485943 IGLV5-45A0A087WSX0 123 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 A0A096LNJ9 63 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 M0QXV9 152 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BKO60814 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 IGKCP01834 107 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BJP06899 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 TLX1NBP0CAT3 122 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BOP23527 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BBP33778 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BDP58876 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BCP62807 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 S100A12P80511 92 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 DYNC1H1Q14204 4646 aaKnown RBP5.1□□□□□ -1.59
USP40-216ENST00000485943 KIAA0087Q14695 138 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST2H2BEQ16778 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 LBHQ53QV2 105 aaPredicted RBP5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST2H2BFQ5QNW6 126 aaPredicted RBP5.1□□□□□ -1.59
USP40-216ENST00000485943 Q6ZRP5 223 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BHQ93079 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BNQ99877 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 HIST1H2BMQ99879 126 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 MIEN1Q9BRT3 115 aa5.1□□□□□ -1.59
USP40-216ENST00000485943 MYMXA0A1B0GTQ4 84 aa5.09□□□□□ -1.59
USP40-216ENST00000485943 PANO1I0J062 215 aa5.09□□□□□ -1.59
USP40-216ENST00000485943 KRTDAPP60985 99 aa5.09□□□□□ -1.59
USP40-216ENST00000485943 CIRBPQ14011 172 aaKnown RBP5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms