RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 NDUFA1O15239 70 aa11.6□□□□□ -0.55
SMARCD3-212ENST00000485610 Q8N814 137 aa11.6□□□□□ -0.55
SMARCD3-212ENST00000485610 CAMK2N2Q96S95 79 aa11.6□□□□□ -0.55
SMARCD3-212ENST00000485610 C2orf82Q6UX34 121 aa11.59□□□□□ -0.55
SMARCD3-212ENST00000485610 LINC00336Q6ZUF6 198 aa11.59□□□□□ -0.55
SMARCD3-212ENST00000485610 ZNF625Q96I27 306 aaPredicted RBP11.59□□□□□ -0.55
SMARCD3-212ENST00000485610 C12orf57Q99622 126 aa11.58□□□□□ -0.56
SMARCD3-212ENST00000485610 MYMXA0A1B0GTQ4 84 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 ZNF815PA8K554 130 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 SYCNQ0VAF6 134 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 PCP2Q8IVA1 136 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 TTTY13Q9BZ97 58 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 CNBPP62633 177 aaKnown RBP11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 UNQ6190/PRO20217Q6UXQ8 127 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 CARD19Q96LW7 228 aa11.57□□□□□ -0.56
SMARCD3-212ENST00000485610 DNAH17Q9UFH2 4485 aa11.56□□□□□ -0.56
SMARCD3-212ENST00000485610 COX8AP10176 69 aa11.56□□□□□ -0.56
SMARCD3-212ENST00000485610 HERV-K104P63124 156 aa11.56□□□□□ -0.56
SMARCD3-212ENST00000485610 Q6ZRU5 148 aa11.56□□□□□ -0.56
SMARCD3-212ENST00000485610 SLPIP03973 132 aa11.55□□□□□ -0.56
SMARCD3-212ENST00000485610 C10orf25Q5T742 122 aa11.55□□□□□ -0.56
SMARCD3-212ENST00000485610 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.54□□□□□ -0.56
SMARCD3-212ENST00000485610 TRBV30A0A0K0K1B3 111 aa11.54□□□□□ -0.56
SMARCD3-212ENST00000485610 LINC00518Q8N0U6 118 aa11.54□□□□□ -0.56
SMARCD3-212ENST00000485610 C14orf144Q96I85 54 aa11.53□□□□□ -0.56
SMARCD3-212ENST00000485610 C6orf48Q9UBA6 75 aa11.53□□□□□ -0.56
SMARCD3-212ENST00000485610 BOD1L2Q8IYS8 172 aa11.52□□□□□ -0.56
SMARCD3-212ENST00000485610 DLEU1O43261 78 aa11.51□□□□□ -0.57
SMARCD3-212ENST00000485610 RNF151Q2KHN1 245 aa11.51□□□□□ -0.57
SMARCD3-212ENST00000485610 A0A0J9YXY3 114 aa11.51□□□□□ -0.57
SMARCD3-212ENST00000485610 SLC25A34Q6PIV7 304 aa11.51□□□□□ -0.57
SMARCD3-212ENST00000485610 ERG28Q9UKR5 140 aa11.51□□□□□ -0.57
SMARCD3-212ENST00000485610 MEIG1Q5JSS6 88 aa11.5□□□□□ -0.57
SMARCD3-212ENST00000485610 SCGB1D4Q6XE38 83 aa11.5□□□□□ -0.57
SMARCD3-212ENST00000485610 TP73-AS1Q9UF72 201 aa11.5□□□□□ -0.57
SMARCD3-212ENST00000485610 LINC00587B1AMM8 73 aa11.49□□□□□ -0.57
SMARCD3-212ENST00000485610 C9orf116Q5BN46 136 aaPredicted RBP11.49□□□□□ -0.57
SMARCD3-212ENST00000485610 IGLV5-52A0A0A0MRZ9 124 aa11.47□□□□□ -0.57
SMARCD3-212ENST00000485610 COX17Q14061 63 aa11.47□□□□□ -0.57
SMARCD3-212ENST00000485610 C9orf163Q8N9P6 203 aa11.47□□□□□ -0.57
SMARCD3-212ENST00000485610 FAT2Q9NYQ8 4349 aa11.47□□□□□ -0.57
SMARCD3-212ENST00000485610 TIMM17BO60830 172 aa11.46□□□□□ -0.57
SMARCD3-212ENST00000485610 PFN2P35080 140 aa11.46□□□□□ -0.57
SMARCD3-212ENST00000485610 CIRBPQ14011 172 aaKnown RBP11.46□□□□□ -0.57
SMARCD3-212ENST00000485610 PRO1933Q9H354 126 aa11.46□□□□□ -0.57
SMARCD3-212ENST00000485610 UQCR10Q9UDW1 63 aa11.46□□□□□ -0.57
SMARCD3-212ENST00000485610 PKIGQ9Y2B9 76 aa11.46□□□□□ -0.57
SMARCD3-212ENST00000485610 SMIM13P0DJ93 91 aa11.45□□□□□ -0.58
SMARCD3-212ENST00000485610 LOC107984640A0A0U1RRK4 108 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 TMEM238C9JI98 176 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 NDUFC2-KCTD14E9PQ53 114 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 TLX1NBP0CAT3 122 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 LINC00158P58513 81 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 KRTAP10-2P60368 255 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 PGPEP1Q9NXJ5 209 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 A0A0U1RRA0 63 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 TSTD3H0UI37 97 aa11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 FUSP35637 526 aaKnown RBP eCLIP11.44□□□□□ -0.58
SMARCD3-212ENST00000485610 HECTD4Q9Y4D8 3996 aa11.43□□□□□ -0.58
SMARCD3-212ENST00000485610 LITAFQ99732 161 aa11.43□□□□□ -0.58
SMARCD3-212ENST00000485610 A0A1B0GVY2 172 aa11.42□□□□□ -0.58
SMARCD3-212ENST00000485610 RPL18AQ02543 176 aaKnown RBP11.42□□□□□ -0.58
SMARCD3-212ENST00000485610 C2orf91Q6ZV80 131 aa11.42□□□□□ -0.58
SMARCD3-212ENST00000485610 HIGD1BQ9P298 99 aa11.42□□□□□ -0.58
SMARCD3-212ENST00000485610 LINC01620Q4KN68 170 aa11.41□□□□□ -0.58
SMARCD3-212ENST00000485610 MIR7-3HGQ8N6C7 128 aa11.41□□□□□ -0.58
SMARCD3-212ENST00000485610 MIEN1Q9BRT3 115 aa11.41□□□□□ -0.58
SMARCD3-212ENST00000485610 RYR3Q15413 4870 aa11.41□□□□□ -0.58
SMARCD3-212ENST00000485610 ADAMTSL4-AS1Q5T5F5 129 aa11.4□□□□□ -0.58
SMARCD3-212ENST00000485610 Q6ZRP5 223 aa11.4□□□□□ -0.58
SMARCD3-212ENST00000485610 SPANXB1Q9NS25 103 aaPredicted RBP11.4□□□□□ -0.58
SMARCD3-212ENST00000485610 DAND5Q8N907 189 aa11.39□□□□□ -0.59
SMARCD3-212ENST00000485610 SPANXDQ9BXN6 97 aa11.39□□□□□ -0.59
SMARCD3-212ENST00000485610 SPANXCQ9NY87 97 aa11.39□□□□□ -0.59
SMARCD3-212ENST00000485610 DNAH11Q96DT5 4516 aa11.39□□□□□ -0.59
SMARCD3-212ENST00000485610 GAGE2EQ4V326 116 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 SDIM1Q6ZPB5 146 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 GAGE2DQ9UEU5 116 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 C16orf90A8MZG2 172 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 HNRNPA3P51991 378 aaKnown RBP11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 Q6ZVH6 145 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 SND1-IT1Q9HBX3 110 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 PKD1P98161 4303 aa11.38□□□□□ -0.59
SMARCD3-212ENST00000485610 A0A096LNI7 61 aa11.37□□□□□ -0.59
SMARCD3-212ENST00000485610 GCSHP23434 173 aa11.37□□□□□ -0.59
SMARCD3-212ENST00000485610 PTTG1IPP53801 180 aa11.37□□□□□ -0.59
SMARCD3-212ENST00000485610 GAGE2BQ13066 116 aa11.37□□□□□ -0.59
SMARCD3-212ENST00000485610 SRSF9Q13242 221 aaKnown RBP eCLIP11.36□□□□□ -0.59
SMARCD3-212ENST00000485610 IGKV2-24A0A0C4DH68 120 aa11.35□□□□□ -0.59
SMARCD3-212ENST00000485610 COPS9Q8WXC6 57 aa11.35□□□□□ -0.59
SMARCD3-212ENST00000485610 HIST1H4GQ99525 98 aa11.35□□□□□ -0.59
SMARCD3-212ENST00000485610 XAGE1AQ9HD64 81 aa11.35□□□□□ -0.59
SMARCD3-212ENST00000485610 IFITM1P13164 125 aa11.34□□□□□ -0.59
SMARCD3-212ENST00000485610 LINC00308Q8TCZ7 52 aa11.34□□□□□ -0.59
SMARCD3-212ENST00000485610 NPC2P61916 151 aa11.33□□□□□ -0.6
SMARCD3-212ENST00000485610 LINC00474Q9P2X8 69 aa11.33□□□□□ -0.6
SMARCD3-212ENST00000485610 CHTF8P0CG12 524 aa11.32□□□□□ -0.6
SMARCD3-212ENST00000485610 TAL2Q16559 108 aa11.32□□□□□ -0.6
SMARCD3-212ENST00000485610 C9orf129Q5T035 196 aaKnown RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms