RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 C11orf86A6NJI1 115 aa10.76□□□□□ -0.69
TRIM54-203ENST00000485306 SCXQ7RTU7 201 aa10.76□□□□□ -0.69
TRIM54-203ENST00000485306 C5orf38Q86SI9 138 aa10.76□□□□□ -0.69
TRIM54-203ENST00000485306 CDKN2A-AS1Q9UH64 79 aa10.76□□□□□ -0.69
TRIM54-203ENST00000485306 IGKCP01834 107 aa10.75□□□□□ -0.69
TRIM54-203ENST00000485306 ZNF22P17026 224 aaPredicted RBP10.75□□□□□ -0.69
TRIM54-203ENST00000485306 OR10D4PQ8NGN7 298 aa10.75□□□□□ -0.69
TRIM54-203ENST00000485306 VPS13BQ7Z7G8 4022 aa10.74□□□□□ -0.69
TRIM54-203ENST00000485306 C9orf163Q8N9P6 203 aa10.74□□□□□ -0.69
TRIM54-203ENST00000485306 TMEM170BQ5T4T1 132 aa10.73□□□□□ -0.69
TRIM54-203ENST00000485306 CIRBP-AS1Q8TBR5 109 aa10.73□□□□□ -0.69
TRIM54-203ENST00000485306 IGHV3-64A0A075B6Q5 118 aa10.72□□□□□ -0.69
TRIM54-203ENST00000485306 hDV102S1A0JD36 115 aa10.72□□□□□ -0.69
TRIM54-203ENST00000485306 PMCHL2Q9BQD1 86 aa10.72□□□□□ -0.69
TRIM54-203ENST00000485306 GVQW2A0A096LPI5 108 aaPredicted RBP10.71□□□□□ -0.69
TRIM54-203ENST00000485306 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.7□□□□□ -0.7
TRIM54-203ENST00000485306 A6NJY4 79 aa10.7□□□□□ -0.7
TRIM54-203ENST00000485306 SMIM1B2RUZ4 78 aa10.7□□□□□ -0.7
TRIM54-203ENST00000485306 HERVK_113P61574 105 aa10.7□□□□□ -0.7
TRIM54-203ENST00000485306 C15orf56Q8N910 161 aa10.7□□□□□ -0.7
TRIM54-203ENST00000485306 FLG2Q5D862 2391 aaPredicted RBP10.7□□□□□ -0.7
TRIM54-203ENST00000485306 DMBT1Q9UGM3 2413 aaPredicted RBP10.69□□□□□ -0.7
TRIM54-203ENST00000485306 TMEM223A0PJW6 202 aa10.69□□□□□ -0.7
TRIM54-203ENST00000485306 F8WDY8 70 aa10.69□□□□□ -0.7
TRIM54-203ENST00000485306 CNBPP62633 177 aaKnown RBP10.69□□□□□ -0.7
TRIM54-203ENST00000485306 ORAOV1Q8WV07 137 aa10.69□□□□□ -0.7
TRIM54-203ENST00000485306 IGLV5-39A0A0G2JS06 123 aa10.68□□□□□ -0.7
TRIM54-203ENST00000485306 ZNF561-AS1K7EIQ3 104 aa10.68□□□□□ -0.7
TRIM54-203ENST00000485306 SCGB1D1O95968 90 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 PRSS2P07478 247 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 SPINK8P0C7L1 97 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 SPAG11BQ08648 103 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 JOSD1Q15040 202 aaPredicted RBP10.67□□□□□ -0.7
TRIM54-203ENST00000485306 SDIM1Q6ZPB5 146 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 Q8IZM0 81 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 C2orf48Q96LS8 159 aa10.67□□□□□ -0.7
TRIM54-203ENST00000485306 CXCL5P42830 114 aa10.65□□□□□ -0.7
TRIM54-203ENST00000485306 KIAA0087Q14695 138 aa10.65□□□□□ -0.7
TRIM54-203ENST00000485306 HIGD2BQ4VC39 106 aa10.65□□□□□ -0.7
TRIM54-203ENST00000485306 COX7B2Q8TF08 81 aa10.65□□□□□ -0.7
TRIM54-203ENST00000485306 DPH3Q96FX2 82 aa10.65□□□□□ -0.7
TRIM54-203ENST00000485306 SLPIP03973 132 aa10.64□□□□□ -0.71
TRIM54-203ENST00000485306 C6orf226Q5I0X4 101 aa10.64□□□□□ -0.71
TRIM54-203ENST00000485306 SFTA2Q6UW10 78 aa10.64□□□□□ -0.71
TRIM54-203ENST00000485306 PLEKHB2Q96CS7 222 aa10.64□□□□□ -0.71
TRIM54-203ENST00000485306 TOMM7Q9P0U1 55 aa10.64□□□□□ -0.71
TRIM54-203ENST00000485306 HSBP1L1C9JCN9 74 aa10.63□□□□□ -0.71
TRIM54-203ENST00000485306 E9PLD3 99 aa10.63□□□□□ -0.71
TRIM54-203ENST00000485306 LEPROTO15243 131 aa10.63□□□□□ -0.71
TRIM54-203ENST00000485306 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.62□□□□□ -0.71
TRIM54-203ENST00000485306 NDUFA1O15239 70 aa10.61□□□□□ -0.71
TRIM54-203ENST00000485306 CKS1BP61024 79 aa10.61□□□□□ -0.71
TRIM54-203ENST00000485306 ATOH7Q8N100 152 aa10.61□□□□□ -0.71
TRIM54-203ENST00000485306 STPG4Q8N801 248 aa10.61□□□□□ -0.71
TRIM54-203ENST00000485306 CAMK2N2Q96S95 79 aa10.61□□□□□ -0.71
TRIM54-203ENST00000485306 MYCBP2O75592 4640 aa10.6□□□□□ -0.71
TRIM54-203ENST00000485306 RPL37AP61513 92 aaKnown RBP10.6□□□□□ -0.71
TRIM54-203ENST00000485306 SYCNQ0VAF6 134 aa10.6□□□□□ -0.71
TRIM54-203ENST00000485306 KRTAP29-1A8MX34 341 aaPredicted RBP10.59□□□□□ -0.71
TRIM54-203ENST00000485306 CIRBPQ14011 172 aaKnown RBP10.59□□□□□ -0.71
TRIM54-203ENST00000485306 RNF151Q2KHN1 245 aa10.59□□□□□ -0.71
TRIM54-203ENST00000485306 PYY3Q5JQD4 70 aa10.59□□□□□ -0.71
TRIM54-203ENST00000485306 TRBV30A0A0K0K1B3 111 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 PANO1I0J062 215 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 J3QQQ9 107 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 LGALS3P17931 250 aaKnown RBP10.58□□□□□ -0.72
TRIM54-203ENST00000485306 NMUP48645 174 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 KRTAP10-4P60372 401 aaPredicted RBP10.58□□□□□ -0.72
TRIM54-203ENST00000485306 LINC00526Q96FQ7 95 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 CARD19Q96LW7 228 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 PKIGQ9Y2B9 76 aa10.58□□□□□ -0.72
TRIM54-203ENST00000485306 LOC105371267A0A1B0GV96 52 aa10.56□□□□□ -0.72
TRIM54-203ENST00000485306 Q6ZRU5 148 aa10.56□□□□□ -0.72
TRIM54-203ENST00000485306 NDUFA12Q9UI09 145 aa10.56□□□□□ -0.72
TRIM54-203ENST00000485306 A0A087WYN8 130 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 MYMXA0A1B0GTQ4 84 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 HERV-K104P63124 156 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 ANKRD39Q53RE8 183 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 C2orf82Q6UX34 121 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 UNQ6190/PRO20217Q6UXQ8 127 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 SPACA4Q8TDM5 124 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 ZNF625Q96I27 306 aaPredicted RBP10.55□□□□□ -0.72
TRIM54-203ENST00000485306 HERC1Q15751 4861 aa10.55□□□□□ -0.72
TRIM54-203ENST00000485306 LINC00587B1AMM8 73 aa10.54□□□□□ -0.72
TRIM54-203ENST00000485306 CHTF8P0CG12 524 aa10.54□□□□□ -0.72
TRIM54-203ENST00000485306 VAMP8Q9BV40 100 aa10.54□□□□□ -0.72
TRIM54-203ENST00000485306 OXTP01178 125 aa10.53□□□□□ -0.72
TRIM54-203ENST00000485306 TSPEAR-AS2P59090 65 aa10.53□□□□□ -0.72
TRIM54-203ENST00000485306 C10orf25Q5T742 122 aa10.53□□□□□ -0.72
TRIM54-203ENST00000485306 C6orf48Q9UBA6 75 aa10.53□□□□□ -0.72
TRIM54-203ENST00000485306 IGKV2D-26A0A0A0MRZ7 120 aa10.52□□□□□ -0.73
TRIM54-203ENST00000485306 MAJINQ3KP22 176 aa10.52□□□□□ -0.73
TRIM54-203ENST00000485306 PLAC8Q9NZF1 115 aa10.52□□□□□ -0.73
TRIM54-203ENST00000485306 IGKV2-24A0A0C4DH68 120 aa10.51□□□□□ -0.73
TRIM54-203ENST00000485306 TLX1NBP0CAT3 122 aa10.51□□□□□ -0.73
TRIM54-203ENST00000485306 SMIM6P0DI80 62 aa10.51□□□□□ -0.73
TRIM54-203ENST00000485306 LINC00474Q9P2X8 69 aa10.51□□□□□ -0.73
TRIM54-203ENST00000485306 S100A12P80511 92 aa10.5□□□□□ -0.73
TRIM54-203ENST00000485306 COX17Q14061 63 aa10.5□□□□□ -0.73
TRIM54-203ENST00000485306 C7orf33Q8WU49 177 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms