RNA–Protein interactions for RNA: ENST00000482563.1

RBM39-233, Transcript of RNA binding motif protein 39, human

TSL 2

Gene RBM39, Length 1,737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-233	ENST00000482563	KNTC1	P50748	2209 aa		2.81	□□□□□ -1.96
RBM39-233	ENST00000482563	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	2.81	□□□□□ -1.96
RBM39-233	ENST00000482563	GCHFR	P30047	84 aa		2.81	□□□□□ -1.96
RBM39-233	ENST00000482563		Q6JHZ5	121 aa		2.81	□□□□□ -1.96
RBM39-233	ENST00000482563	TARBP1	Q13395	1621 aa	Known RBP	2.81	□□□□□ -1.96
RBM39-233	ENST00000482563	ANKRD36	A6QL64	1941 aa		2.8	□□□□□ -1.96
RBM39-233	ENST00000482563	INO80	Q9ULG1	1556 aa	Predicted RBP	2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	LYNX1	P0DP58	116 aa		2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	C5	P01031	1676 aa		2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	ALK	Q9UM73	1620 aa		2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	PAPPA2	Q9BXP8	1791 aa		2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	TRBV7-4	A0A0J9YYF1	115 aa		2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	ATP7B	P35670	1465 aa		2.79	□□□□□ -1.96
RBM39-233	ENST00000482563	ITSN1	Q15811	1721 aa		2.78	□□□□□ -1.96
RBM39-233	ENST00000482563	ANKRD17	O75179	2603 aa	Known RBP	2.78	□□□□□ -1.96
RBM39-233	ENST00000482563	SETBP1	Q9Y6X0	1596 aa		2.78	□□□□□ -1.96
RBM39-233	ENST00000482563	ZNF831	Q5JPB2	1677 aa		2.77	□□□□□ -1.97
RBM39-233	ENST00000482563	KMT2B	Q9UMN6	2715 aa	Predicted RBP	2.77	□□□□□ -1.97
RBM39-233	ENST00000482563		K7EIL1	84 aa		2.77	□□□□□ -1.97
RBM39-233	ENST00000482563	DEFB119	Q8N690	84 aa		2.77	□□□□□ -1.97
RBM39-233	ENST00000482563	SORL1	Q92673	2214 aa		2.77	□□□□□ -1.97
RBM39-233	ENST00000482563	CNTRL	Q7Z7A1	2325 aa		2.77	□□□□□ -1.97
RBM39-233	ENST00000482563	UMAD1	C9J7I0	102 aa		2.76	□□□□□ -1.97
RBM39-233	ENST00000482563	ASXL3	Q9C0F0	2248 aa		2.76	□□□□□ -1.97
RBM39-233	ENST00000482563	HAMP	P81172	84 aa		2.75	□□□□□ -1.97
RBM39-233	ENST00000482563	GNGT1	P63211	74 aa		2.73	□□□□□ -1.97
RBM39-233	ENST00000482563	RGPD1	P0DJD0	1748 aa		2.73	□□□□□ -1.97
RBM39-233	ENST00000482563	S100A3	P33764	101 aa		2.73	□□□□□ -1.97
RBM39-233	ENST00000482563	KRTAP12-3	P60328	96 aa		2.73	□□□□□ -1.97
RBM39-233	ENST00000482563	PIK3C2B	O00750	1634 aa		2.73	□□□□□ -1.97
RBM39-233	ENST00000482563	HIVEP2	P31629	2446 aa		2.72	□□□□□ -1.97
RBM39-233	ENST00000482563	CD163L1	Q9NR16	1453 aa		2.72	□□□□□ -1.97
RBM39-233	ENST00000482563		J3QKU1	62 aa		2.72	□□□□□ -1.97
RBM39-233	ENST00000482563	SAMD9	Q5K651	1589 aa		2.72	□□□□□ -1.97
RBM39-233	ENST00000482563	EFCAB5	A4FU69	1503 aa		2.71	□□□□□ -1.98
RBM39-233	ENST00000482563	ASXL1	Q8IXJ9	1541 aa		2.71	□□□□□ -1.98
RBM39-233	ENST00000482563	PLXNB2	O15031	1838 aa		2.7	□□□□□ -1.98
RBM39-233	ENST00000482563	PKD1L3	Q7Z443	1732 aa		2.7	□□□□□ -1.98
RBM39-233	ENST00000482563	XRN1	Q8IZH2	1706 aa	Known RBP	2.7	□□□□□ -1.98
RBM39-233	ENST00000482563		A0A1B0GUT8	65 aa		2.7	□□□□□ -1.98
RBM39-233	ENST00000482563	LRP6	O75581	1613 aa		2.69	□□□□□ -1.98
RBM39-233	ENST00000482563	JMJD1C	Q15652	2540 aa		2.69	□□□□□ -1.98
RBM39-233	ENST00000482563	ATP5EP2	Q5VTU8	51 aa		2.68	□□□□□ -1.98
RBM39-233	ENST00000482563	S100Z	Q8WXG8	99 aa		2.68	□□□□□ -1.98
RBM39-233	ENST00000482563	TRBV6-1	A0A0K0K1D8	114 aa		2.68	□□□□□ -1.98
RBM39-233	ENST00000482563	IFI27	P40305	119 aa	Predicted RBP	2.68	□□□□□ -1.98
RBM39-233	ENST00000482563	HILPDA	Q9Y5L2	63 aa		2.68	□□□□□ -1.98
RBM39-233	ENST00000482563	LAMC1	P11047	1609 aa		2.67	□□□□□ -1.98
RBM39-233	ENST00000482563	NKTR	P30414	1462 aa	Known RBP	2.67	□□□□□ -1.98
RBM39-233	ENST00000482563	THOC2	Q8NI27	1593 aa	Known RBP	2.67	□□□□□ -1.98
RBM39-233	ENST00000482563	URB2	Q14146	1524 aa	Known RBP	2.66	□□□□□ -1.98
RBM39-233	ENST00000482563	USP32	Q8NFA0	1604 aa		2.66	□□□□□ -1.98
RBM39-233	ENST00000482563	RP1L1	Q8IWN7	2480 aa	Predicted RBP	2.66	□□□□□ -1.98
RBM39-233	ENST00000482563		A0A087WXM4	84 aa		2.66	□□□□□ -1.98
RBM39-233	ENST00000482563	PIN1P1	O15428	100 aa		2.66	□□□□□ -1.98
RBM39-233	ENST00000482563	HFM1	A2PYH4	1435 aa		2.65	□□□□□ -1.98
RBM39-233	ENST00000482563		A0A1B0GU69	56 aa		2.65	□□□□□ -1.99
RBM39-233	ENST00000482563	LINC00959	A0A1B0GUT2	108 aa		2.65	□□□□□ -1.99
RBM39-233	ENST00000482563		A0A087WWC5	75 aa		2.64	□□□□□ -1.99
RBM39-233	ENST00000482563	SLIT1	O75093	1534 aa		2.64	□□□□□ -1.99
RBM39-233	ENST00000482563	IFI6	P09912	130 aa		2.64	□□□□□ -1.99
RBM39-233	ENST00000482563	SSBP3-AS1	Q7Z2R9	100 aa		2.64	□□□□□ -1.99
RBM39-233	ENST00000482563	ABCA9	Q8IUA7	1624 aa		2.63	□□□□□ -1.99
RBM39-233	ENST00000482563	COX8A	P10176	69 aa		2.63	□□□□□ -1.99
RBM39-233	ENST00000482563	CDC42BPG	Q6DT37	1551 aa		2.63	□□□□□ -1.99
RBM39-233	ENST00000482563	COL6A6	A6NMZ7	2263 aa		2.63	□□□□□ -1.99
RBM39-233	ENST00000482563	TRAV21	A0A0B4J279	112 aa		2.62	□□□□□ -1.99
RBM39-233	ENST00000482563	HMGA1	P17096	107 aa	Known RBP	2.62	□□□□□ -1.99
RBM39-233	ENST00000482563		Q6ZSA8	131 aa		2.62	□□□□□ -1.99
RBM39-233	ENST00000482563	LRRC7	Q96NW7	1537 aa		2.61	□□□□□ -1.99
RBM39-233	ENST00000482563	NAV3	Q8IVL0	2385 aa		2.6	□□□□□ -1.99
RBM39-233	ENST00000482563	UBE2DNL	Q8IWF7	75 aa		2.6	□□□□□ -1.99
RBM39-233	ENST00000482563		H3BVH4	76 aa		2.59	□□□□□ -2
RBM39-233	ENST00000482563	ROS1	P08922	2347 aa		2.58	□□□□□ -2
RBM39-233	ENST00000482563	HMCN1	Q96RW7	5635 aa		2.58	□□□□□ -2
RBM39-233	ENST00000482563	KIAA0556	O60303	1618 aa		2.58	□□□□□ -2
RBM39-233	ENST00000482563	DEFB112	Q30KQ8	113 aa		2.58	□□□□□ -2
RBM39-233	ENST00000482563	ERCC6L2	Q5T890	1561 aa		2.57	□□□□□ -2
RBM39-233	ENST00000482563	TIAM2	Q8IVF5	1701 aa		2.56	□□□□□ -2
RBM39-233	ENST00000482563	DIP2A	Q14689	1571 aa		2.56	□□□□□ -2
RBM39-233	ENST00000482563	ASH1L	Q9NR48	2969 aa	Known RBP	2.56	□□□□□ -2
RBM39-233	ENST00000482563	TULP4	Q9NRJ4	1543 aa		2.56	□□□□□ -2
RBM39-233	ENST00000482563	C10orf95	Q9H7T3	257 aa		2.55	□□□□□ -2
RBM39-233	ENST00000482563	PAPPA	Q13219	1627 aa		2.55	□□□□□ -2
RBM39-233	ENST00000482563	CCDC180	Q9P1Z9	1646 aa		2.55	□□□□□ -2
RBM39-233	ENST00000482563		A0A0G2JMZ2	1700 aa		2.55	□□□□□ -2
RBM39-233	ENST00000482563	PARP4	Q9UKK3	1724 aa	Known RBP	2.55	□□□□□ -2
RBM39-233	ENST00000482563	WIZ	O95785	1651 aa		2.54	□□□□□ -2
RBM39-233	ENST00000482563	ANG	P03950	147 aa	Known RBP	2.54	□□□□□ -2
RBM39-233	ENST00000482563	UBR3	Q6ZT12	1888 aa		2.53	□□□□□ -2
RBM39-233	ENST00000482563	PLCH1	Q4KWH8	1693 aa		2.53	□□□□□ -2
RBM39-233	ENST00000482563	POLR1A	O95602	1720 aa	Predicted RBP	2.52	□□□□□ -2.01
RBM39-233	ENST00000482563	FXYD6-FXYD2	A0A087WZ82	144 aa		2.52	□□□□□ -2.01
RBM39-233	ENST00000482563	SFTA3	P0C7M3	94 aa		2.52	□□□□□ -2.01
RBM39-233	ENST00000482563	WFDC9	Q8NEX5	89 aa		2.52	□□□□□ -2.01
RBM39-233	ENST00000482563	GAFA1	Q96PS6	74 aa		2.52	□□□□□ -2.01
RBM39-233	ENST00000482563	AHCTF1	Q8WYP5	2266 aa		2.52	□□□□□ -2.01
RBM39-233	ENST00000482563	NDUFB1	O75438	58 aa		2.51	□□□□□ -2.01
RBM39-233	ENST00000482563	C3orf79	P0CE67	100 aa		2.51	□□□□□ -2.01
RBM39-233	ENST00000482563	FXYD6P3	P58550	94 aa		2.51	□□□□□ -2.01

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