RNA–Protein interactions for RNA: ENST00000477554.5

PTPN7-209, Transcript of protein tyrosine phosphatase, non-receptor type 7, humanhuman

APPRIS ALT2 TSL 2

Gene PTPN7, Length 1,432 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN7-209ENST00000477554 A0A087WZ39 114 aa11.35□□□□□ -0.59
PTPN7-209ENST00000477554 HIGD2BQ4VC39 106 aa11.35□□□□□ -0.59
PTPN7-209ENST00000477554 LINC01561Q8N1V8 128 aa11.35□□□□□ -0.59
PTPN7-209ENST00000477554 CIRBP-AS1Q8TBR5 109 aa11.35□□□□□ -0.59
PTPN7-209ENST00000477554 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.35□□□□□ -0.59
PTPN7-209ENST00000477554 MALP21145 153 aa11.35□□□□□ -0.59
PTPN7-209ENST00000477554 C5orf38Q86SI9 138 aa11.35□□□□□ -0.59
PTPN7-209ENST00000477554 APOMO95445 188 aa11.34□□□□□ -0.59
PTPN7-209ENST00000477554 C9orf163Q8N9P6 203 aa11.34□□□□□ -0.59
PTPN7-209ENST00000477554 HERVK_113P61574 105 aa11.33□□□□□ -0.6
PTPN7-209ENST00000477554 PYY3Q5JQD4 70 aa11.33□□□□□ -0.6
PTPN7-209ENST00000477554 LINC00528Q8N1L1 170 aa11.33□□□□□ -0.6
PTPN7-209ENST00000477554 LINC00526Q96FQ7 95 aa11.33□□□□□ -0.6
PTPN7-209ENST00000477554 TMEM223A0PJW6 202 aa11.32□□□□□ -0.6
PTPN7-209ENST00000477554 CFAP161Q6P656 301 aa11.32□□□□□ -0.6
PTPN7-209ENST00000477554 SDIM1Q6ZPB5 146 aa11.32□□□□□ -0.6
PTPN7-209ENST00000477554 ATOH7Q8N100 152 aa11.32□□□□□ -0.6
PTPN7-209ENST00000477554 FLG2Q5D862 2391 aaPredicted RBP11.32□□□□□ -0.6
PTPN7-209ENST00000477554 PKHD1L1Q86WI1 4243 aa11.31□□□□□ -0.6
PTPN7-209ENST00000477554 HSBP1L1C9JCN9 74 aa11.31□□□□□ -0.6
PTPN7-209ENST00000477554 INAFM2P0DMQ5 153 aa11.31□□□□□ -0.6
PTPN7-209ENST00000477554 HERC1Q15751 4861 aa11.3□□□□□ -0.6
PTPN7-209ENST00000477554 IGHV1-58A0A0C4DH39 117 aa11.3□□□□□ -0.6
PTPN7-209ENST00000477554 SPINK8P0C7L1 97 aa11.3□□□□□ -0.6
PTPN7-209ENST00000477554 CHTF8P0CG12 524 aa11.3□□□□□ -0.6
PTPN7-209ENST00000477554 KRTAP10-4P60372 401 aaPredicted RBP11.3□□□□□ -0.6
PTPN7-209ENST00000477554 CNBPP62633 177 aaKnown RBP11.3□□□□□ -0.6
PTPN7-209ENST00000477554 SMIM1B2RUZ4 78 aa11.29□□□□□ -0.6
PTPN7-209ENST00000477554 IGHV3-64A0A075B6Q5 118 aa11.28□□□□□ -0.6
PTPN7-209ENST00000477554 STPG4Q8N801 248 aa11.28□□□□□ -0.6
PTPN7-209ENST00000477554 FAM229AH3BQW9 127 aa11.27□□□□□ -0.6
PTPN7-209ENST00000477554 LRP1Q07954 4544 aaKnown RBP11.27□□□□□ -0.61
PTPN7-209ENST00000477554 IGLV5-39A0A0G2JS06 123 aa11.26□□□□□ -0.61
PTPN7-209ENST00000477554 E9PLD3 99 aa11.26□□□□□ -0.61
PTPN7-209ENST00000477554 SMIM6P0DI80 62 aa11.26□□□□□ -0.61
PTPN7-209ENST00000477554 ORAOV1Q8WV07 137 aa11.26□□□□□ -0.61
PTPN7-209ENST00000477554 GVQW2A0A096LPI5 108 aaPredicted RBP11.26□□□□□ -0.61
PTPN7-209ENST00000477554 LEPROTO15243 131 aa11.26□□□□□ -0.61
PTPN7-209ENST00000477554 PLEKHB2Q96CS7 222 aa11.26□□□□□ -0.61
PTPN7-209ENST00000477554 PRSS2P07478 247 aa11.25□□□□□ -0.61
PTPN7-209ENST00000477554 Q8IZM0 81 aa11.25□□□□□ -0.61
PTPN7-209ENST00000477554 VAMP8Q9BV40 100 aa11.25□□□□□ -0.61
PTPN7-209ENST00000477554 ZNF561-AS1K7EIQ3 104 aa11.24□□□□□ -0.61
PTPN7-209ENST00000477554 COX7B2Q8TF08 81 aa11.24□□□□□ -0.61
PTPN7-209ENST00000477554 TOMM7Q9P0U1 55 aa11.24□□□□□ -0.61
PTPN7-209ENST00000477554 FAT3Q8TDW7 4589 aa11.23□□□□□ -0.61
PTPN7-209ENST00000477554 S100A12P80511 92 aa11.23□□□□□ -0.61
PTPN7-209ENST00000477554 SPAG11BQ08648 103 aa11.23□□□□□ -0.61
PTPN7-209ENST00000477554 MAJINQ3KP22 176 aa11.23□□□□□ -0.61
PTPN7-209ENST00000477554 C6orf226Q5I0X4 101 aa11.23□□□□□ -0.61
PTPN7-209ENST00000477554 J3QQQ9 107 aa11.22□□□□□ -0.61
PTPN7-209ENST00000477554 CIRBPQ14011 172 aaKnown RBP11.22□□□□□ -0.61
PTPN7-209ENST00000477554 ANKRD39Q53RE8 183 aa11.22□□□□□ -0.61
PTPN7-209ENST00000477554 F8WDY8 70 aa11.21□□□□□ -0.61
PTPN7-209ENST00000477554 LGALS3P17931 250 aaKnown RBP11.21□□□□□ -0.61
PTPN7-209ENST00000477554 CXCL5P42830 114 aa11.21□□□□□ -0.61
PTPN7-209ENST00000477554 KIAA0087Q14695 138 aa11.21□□□□□ -0.61
PTPN7-209ENST00000477554 PAM16Q9Y3D7 125 aa11.21□□□□□ -0.61
PTPN7-209ENST00000477554 NMUP48645 174 aa11.2□□□□□ -0.62
PTPN7-209ENST00000477554 HNRNPA3P51991 378 aaKnown RBP11.2□□□□□ -0.62
PTPN7-209ENST00000477554 SPATA45Q537H7 98 aa11.2□□□□□ -0.62
PTPN7-209ENST00000477554 SFTA2Q6UW10 78 aa11.2□□□□□ -0.62
PTPN7-209ENST00000477554 C2orf48Q96LS8 159 aa11.2□□□□□ -0.62
PTPN7-209ENST00000477554 CKS1BP61024 79 aa11.19□□□□□ -0.62
PTPN7-209ENST00000477554 SPACA4Q8TDM5 124 aa11.19□□□□□ -0.62
PTPN7-209ENST00000477554 IGKV2D-26A0A0A0MRZ7 120 aa11.18□□□□□ -0.62
PTPN7-209ENST00000477554 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.18□□□□□ -0.62
PTPN7-209ENST00000477554 IGKV2-24A0A0C4DH68 120 aa11.18□□□□□ -0.62
PTPN7-209ENST00000477554 A0A087WYN8 130 aa11.18□□□□□ -0.62
PTPN7-209ENST00000477554 A0A096LNI7 61 aa11.18□□□□□ -0.62
PTPN7-209ENST00000477554 MYMXA0A1B0GTQ4 84 aa11.17□□□□□ -0.62
PTPN7-209ENST00000477554 NDUFA1O15239 70 aa11.17□□□□□ -0.62
PTPN7-209ENST00000477554 PLA2G1BP04054 148 aaKnown RBP11.17□□□□□ -0.62
PTPN7-209ENST00000477554 TSPEAR-AS2P59090 65 aa11.17□□□□□ -0.62
PTPN7-209ENST00000477554 CAMK2N2Q96S95 79 aa11.17□□□□□ -0.62
PTPN7-209ENST00000477554 NDUFA12Q9UI09 145 aa11.17□□□□□ -0.62
PTPN7-209ENST00000477554 Q6ZRU5 148 aa11.15□□□□□ -0.62
PTPN7-209ENST00000477554 ZNF625Q96I27 306 aaPredicted RBP11.15□□□□□ -0.62
PTPN7-209ENST00000477554 C12orf57Q99622 126 aa11.15□□□□□ -0.62
PTPN7-209ENST00000477554 HERV-K104P63124 156 aa11.14□□□□□ -0.63
PTPN7-209ENST00000477554 C2orf82Q6UX34 121 aa11.14□□□□□ -0.63
PTPN7-209ENST00000477554 CARD19Q96LW7 228 aa11.14□□□□□ -0.63
PTPN7-209ENST00000477554 ZNF815PA8K554 130 aa11.13□□□□□ -0.63
PTPN7-209ENST00000477554 COX8AP10176 69 aa11.13□□□□□ -0.63
PTPN7-209ENST00000477554 SYCNQ0VAF6 134 aa11.13□□□□□ -0.63
PTPN7-209ENST00000477554 PCP2Q8IVA1 136 aa11.13□□□□□ -0.63
PTPN7-209ENST00000477554 DPH3Q96FX2 82 aa11.13□□□□□ -0.63
PTPN7-209ENST00000477554 TRBV30A0A0K0K1B3 111 aa11.12□□□□□ -0.63
PTPN7-209ENST00000477554 RPL37AP61513 92 aaKnown RBP11.12□□□□□ -0.63
PTPN7-209ENST00000477554 UNQ6190/PRO20217Q6UXQ8 127 aa11.12□□□□□ -0.63
PTPN7-209ENST00000477554 LINC00518Q8N0U6 118 aa11.12□□□□□ -0.63
PTPN7-209ENST00000477554 TTTY13Q9BZ97 58 aa11.11□□□□□ -0.63
PTPN7-209ENST00000477554 PLAC8Q9NZF1 115 aa11.11□□□□□ -0.63
PTPN7-209ENST00000477554 DMBT1Q9UGM3 2413 aaPredicted RBP11.11□□□□□ -0.63
PTPN7-209ENST00000477554 LINC00587B1AMM8 73 aa11.1□□□□□ -0.63
PTPN7-209ENST00000477554 C10orf25Q5T742 122 aa11.1□□□□□ -0.63
PTPN7-209ENST00000477554 C14orf144Q96I85 54 aa11.1□□□□□ -0.63
PTPN7-209ENST00000477554 DLEU1O43261 78 aa11.09□□□□□ -0.63
PTPN7-209ENST00000477554 RNF151Q2KHN1 245 aa11.09□□□□□ -0.63
PTPN7-209ENST00000477554 SLC25A34Q6PIV7 304 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms