RNA–Protein interactions for RNA: ENST00000477541.1

HLA-DMA-208, Transcript of major histocompatibility complex, class II, DM alpha, humanhuman

Gene HLA-DMA, Length 1,735 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMA-208ENST00000477541 KHDC1LQ5JSQ8 128 aa9.53□□□□□ -0.88
HLA-DMA-208ENST00000477541 VPS13CQ709C8 3753 aa9.53□□□□□ -0.88
HLA-DMA-208ENST00000477541 RPL18AQ02543 176 aaKnown RBP9.53□□□□□ -0.88
HLA-DMA-208ENST00000477541 Q9HAA7 133 aa9.53□□□□□ -0.88
HLA-DMA-208ENST00000477541 ATRQ13535 2644 aa9.52□□□□□ -0.88
HLA-DMA-208ENST00000477541 ATP5EP2Q5VTU8 51 aa9.52□□□□□ -0.89
HLA-DMA-208ENST00000477541 C2orf48Q96LS8 159 aa9.52□□□□□ -0.89
HLA-DMA-208ENST00000477541 LINC00167Q96N53 147 aa9.52□□□□□ -0.89
HLA-DMA-208ENST00000477541 TRBV6-8A0A0A6YYG3 113 aa9.51□□□□□ -0.89
HLA-DMA-208ENST00000477541 RPS28P62857 69 aaKnown RBP9.51□□□□□ -0.89
HLA-DMA-208ENST00000477541 NOP10Q9NPE3 64 aaKnown RBP9.51□□□□□ -0.89
HLA-DMA-208ENST00000477541 TRGV2A0A075B6R0 118 aa9.51□□□□□ -0.89
HLA-DMA-208ENST00000477541 A0A087WYN8 130 aa9.51□□□□□ -0.89
HLA-DMA-208ENST00000477541 ORMDL1Q9P0S3 153 aa9.51□□□□□ -0.89
HLA-DMA-208ENST00000477541 PLAC8L1A1L4L8 177 aa9.5□□□□□ -0.89
HLA-DMA-208ENST00000477541 JMJD7-PLA2G4BH0Y9G9 81 aa9.5□□□□□ -0.89
HLA-DMA-208ENST00000477541 J3KT08 172 aa9.5□□□□□ -0.89
HLA-DMA-208ENST00000477541 TOMM7Q9P0U1 55 aa9.5□□□□□ -0.89
HLA-DMA-208ENST00000477541 CR1P17927 2039 aa9.49□□□□□ -0.89
HLA-DMA-208ENST00000477541 SVEP1Q4LDE5 3571 aa9.49□□□□□ -0.89
HLA-DMA-208ENST00000477541 TRGV4A0A0C4DH28 118 aa9.49□□□□□ -0.89
HLA-DMA-208ENST00000477541 NRGNQ92686 78 aa9.49□□□□□ -0.89
HLA-DMA-208ENST00000477541 CFAP161Q6P656 301 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 Q8IZM0 81 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 CCL24O00175 119 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 LECT2O14960 151 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 SERP2Q8N6R1 65 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 SMR3AQ99954 134 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 C14orf132Q9NPU4 83 aa9.48□□□□□ -0.89
HLA-DMA-208ENST00000477541 MXRA5Q9NR99 2828 aa9.47□□□□□ -0.89
HLA-DMA-208ENST00000477541 PAX4O43316 350 aa9.47□□□□□ -0.89
HLA-DMA-208ENST00000477541 NDUFC2O95298 119 aa9.47□□□□□ -0.89
HLA-DMA-208ENST00000477541 CCKP06307 115 aa9.47□□□□□ -0.89
HLA-DMA-208ENST00000477541 TMEM258P61165 79 aa9.47□□□□□ -0.89
HLA-DMA-208ENST00000477541 A0A1B0GUV1 79 aa9.46□□□□□ -0.89
HLA-DMA-208ENST00000477541 LINC00959A0A1B0GUT2 108 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 GIG44P09565 113 aaPredicted RBP9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 COX17Q14061 63 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 FHL2Q14192 279 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 LINC00846Q9NV44 126 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 IGLV4-60A0A075B6I1 120 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 SS18Q15532 418 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 C6orf226Q5I0X4 101 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 MAPK1IP1LQ8NDC0 245 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 MUC7Q8TAX7 377 aa9.45□□□□□ -0.9
HLA-DMA-208ENST00000477541 TRBV10-3A0A0K0K1G6 114 aa9.44□□□□□ -0.9
HLA-DMA-208ENST00000477541 TMEM256-PLSCR3K7ERE1 68 aa9.44□□□□□ -0.9
HLA-DMA-208ENST00000477541 CSNK1G2-AS1Q8NCQ2 148 aa9.44□□□□□ -0.9
HLA-DMA-208ENST00000477541 OR13C6PQ8NH95 151 aa9.44□□□□□ -0.9
HLA-DMA-208ENST00000477541 DEFB113Q30KQ7 82 aa9.43□□□□□ -0.9
HLA-DMA-208ENST00000477541 KIR2DL5BQ8NHK3 375 aa9.43□□□□□ -0.9
HLA-DMA-208ENST00000477541 LOC100131303A0A0U1RQF7 123 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 hADV29S1A0JD25 119 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 H3BQ85 93 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 PFN2P35080 140 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 LINC00612Q8N6U2 182 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 C3orf56Q8N813 242 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 WFDC11Q8NEX6 87 aa9.42□□□□□ -0.9
HLA-DMA-208ENST00000477541 USP17L23D6RBM5 183 aa9.41□□□□□ -0.9
HLA-DMA-208ENST00000477541 BCE1O60756 84 aa9.41□□□□□ -0.9
HLA-DMA-208ENST00000477541 IGLV1-51P01701 117 aa9.41□□□□□ -0.9
HLA-DMA-208ENST00000477541 LYPD5Q6UWN5 251 aa9.41□□□□□ -0.9
HLA-DMA-208ENST00000477541 NDUFC2-KCTD14E9PQ53 114 aa9.4□□□□□ -0.9
HLA-DMA-208ENST00000477541 NCR3O14931 201 aa9.4□□□□□ -0.9
HLA-DMA-208ENST00000477541 C9orf129Q5T035 196 aaKnown RBP9.4□□□□□ -0.9
HLA-DMA-208ENST00000477541 Q8N814 137 aa9.4□□□□□ -0.9
HLA-DMA-208ENST00000477541 UPK3BQ9BT76 320 aa9.4□□□□□ -0.9
HLA-DMA-208ENST00000477541 C19orf73Q9NVV2 129 aa9.4□□□□□ -0.9
HLA-DMA-208ENST00000477541 IGKV3D-7A0A0C4DH55 119 aa9.39□□□□□ -0.91
HLA-DMA-208ENST00000477541 IGKV3OR2-268A0A0C4DH90 116 aa9.39□□□□□ -0.91
HLA-DMA-208ENST00000477541 HIVEP2P31629 2446 aa9.39□□□□□ -0.91
HLA-DMA-208ENST00000477541 IGHV4-28A0A0C4DH34 117 aa9.39□□□□□ -0.91
HLA-DMA-208ENST00000477541 DNAJC9-AS1A6NH13 148 aa9.39□□□□□ -0.91
HLA-DMA-208ENST00000477541 C16orf95Q9H693 158 aa9.39□□□□□ -0.91
HLA-DMA-208ENST00000477541 ANK2Q01484 3957 aa9.38□□□□□ -0.91
HLA-DMA-208ENST00000477541 KRTAP1-3Q8IUG1 177 aa9.37□□□□□ -0.91
HLA-DMA-208ENST00000477541 TLN2Q9Y4G6 2542 aa9.37□□□□□ -0.91
HLA-DMA-208ENST00000477541 SMIM9A6NGZ8 99 aa9.36□□□□□ -0.91
HLA-DMA-208ENST00000477541 NANOS2P60321 138 aaKnown RBP9.36□□□□□ -0.91
HLA-DMA-208ENST00000477541 UBL5Q9BZL1 73 aa9.36□□□□□ -0.91
HLA-DMA-208ENST00000477541 RPL35AP18077 110 aaKnown RBP9.35□□□□□ -0.91
HLA-DMA-208ENST00000477541 CD164L2Q6UWJ8 174 aa9.35□□□□□ -0.91
HLA-DMA-208ENST00000477541 INAFM1C9JVW0 142 aa9.34□□□□□ -0.91
HLA-DMA-208ENST00000477541 WIPF1O43516 503 aa9.34□□□□□ -0.91
HLA-DMA-208ENST00000477541 ZANQ9Y493 2812 aa9.34□□□□□ -0.91
HLA-DMA-208ENST00000477541 LOC110117498A0A087WWA1 95 aa9.34□□□□□ -0.92
HLA-DMA-208ENST00000477541 SLPIP03973 132 aa9.34□□□□□ -0.92
HLA-DMA-208ENST00000477541 PDE6GP18545 87 aa9.34□□□□□ -0.92
HLA-DMA-208ENST00000477541 XCL1P47992 114 aa9.34□□□□□ -0.92
HLA-DMA-208ENST00000477541 C5orf47Q569G3 176 aa9.34□□□□□ -0.92
HLA-DMA-208ENST00000477541 PRO0255Q9UI72 69 aa9.34□□□□□ -0.92
HLA-DMA-208ENST00000477541 GYPEP15421 78 aa9.33□□□□□ -0.92
HLA-DMA-208ENST00000477541 KIAA0087Q14695 138 aa9.33□□□□□ -0.92
HLA-DMA-208ENST00000477541 DPH3Q96FX2 82 aa9.32□□□□□ -0.92
HLA-DMA-208ENST00000477541 A0A087WVE0 104 aa9.31□□□□□ -0.92
HLA-DMA-208ENST00000477541 ZNF561-AS1K7EIQ3 104 aa9.31□□□□□ -0.92
HLA-DMA-208ENST00000477541 GHRHP01286 108 aa9.31□□□□□ -0.92
HLA-DMA-208ENST00000477541 FAM19A5Q7Z5A7 132 aaPredicted RBP9.31□□□□□ -0.92
HLA-DMA-208ENST00000477541 RNASE1P07998 156 aaKnown RBP9.31□□□□□ -0.92
HLA-DMA-208ENST00000477541 LINC00575Q6W349 94 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms