RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 SYNGR2O43760 224 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 TRGC1P0CF51 173 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 H2BFSP57053 126 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 SEC61BP60468 96 aaKnown RBP2.69□□□□□ -1.98
USP4-209ENST00000475873 TMEM258P61165 79 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 LSM3P62310 102 aaKnown RBP2.69□□□□□ -1.98
USP4-209ENST00000475873 ADIRFQ15847 76 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 Q5XG85 94 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 KRTAP5-3Q6L8H2 238 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 Q6Q795 121 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 KRTAP7-1Q8IUC3 87 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 KCNS1Q96KK3 526 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 FAM167A-AS1Q96KT0 104 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 NPVFQ9HCQ7 196 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 ANAPC11Q9NYG5 84 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 TIMM9Q9Y5J7 89 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 V9GYH0 126 aa2.69□□□□□ -1.98
USP4-209ENST00000475873 TRBV7-3A0A075B6L6 115 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 A0A087WZ39 114 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 TRAV21A0A0B4J279 112 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 FAM236AA0A1B0GUQ0 79 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 FAM236BA0A1B0GV22 79 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 RBAKDNA6NC62 111 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 A8MWV9 139 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 NCR2O95944 276 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 BCL2P10415 239 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 FGF6P10767 208 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 SUMO2P61956 95 aaKnown RBP2.68□□□□□ -1.98
USP4-209ENST00000475873 HBG1P69891 147 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 HBG2P69892 147 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 SS18Q15532 418 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 KIAA1644Q3SXP7 199 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 SPATA45Q537H7 98 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 PYDC2Q56P42 97 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 TMEM14EPQ6UXP3 125 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 NEXN-AS1Q8NBZ9 246 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 OR10G8Q8NGN5 311 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 TYMSOSQ8TAI1 123 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 FMC1Q96HJ9 113 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 C2orf48Q96LS8 159 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 YPEL4Q96NS1 127 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 SLC25A2Q9BXI2 301 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 LENEPQ9Y5L5 61 aa2.68□□□□□ -1.98
USP4-209ENST00000475873 FXYD6-FXYD2A0A087WZ82 144 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 TRAV8-4A0A0B4J246 113 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 FAM168BA1KXE4 195 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 SNCGO76070 127 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 MT-ATP8P03928 68 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 IGLC3P0DOY3 106 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 SLC25A6P12236 298 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 CTRLP40313 264 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 HERVK_113P63121 156 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 FAM74A4Q5TZK3 123 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 SCGB1D4Q6XE38 83 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 BRK1Q8WUW1 75 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 RAB37Q96AX2 223 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 FXYD5Q96DB9 178 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 CARD19Q96LW7 228 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 SLC25A21Q9BQT8 299 aaPredicted RBP2.67□□□□□ -1.98
USP4-209ENST00000475873 SPANXDQ9BXN6 97 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 GNB1LQ9BYB4 327 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 MTFP1Q9UDX5 166 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 SPCS1Q9Y6A9 102 aa2.67□□□□□ -1.98
USP4-209ENST00000475873 IGKV3D-20A0A0C4DH25 116 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 TRBV10-1A0A0K0K1A3 114 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 TSHBP01222 138 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 TRGC2P03986 189 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 NMUP48645 174 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 SEC11AP67812 179 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 RPL36AP83881 106 aaKnown RBP2.66□□□□□ -1.98
USP4-209ENST00000475873 ZNF345Q14585 488 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 KRTAP19-6Q3LI70 58 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 PIK3CD-AS1Q5SR53 167 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 LINC00304Q8N9R0 145 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 RPL36ALQ969Q0 106 aaKnown RBP2.66□□□□□ -1.98
USP4-209ENST00000475873 ST20Q9HBF5 79 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 PSENENQ9NZ42 101 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 LAMTOR3Q9UHA4 124 aa2.66□□□□□ -1.98
USP4-209ENST00000475873 GRIFINA4D1Z8 144 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 C9orf118A6NHY6 69 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 TMEM250H0YL14 139 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 UQCRQO14949 82 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 PLA2G10O15496 165 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 FABP2P12104 132 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 TAS2R19P59542 299 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 FOXI1Q12951 378 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 SLC25A34Q6PIV7 304 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 MIR17HGQ75NE6 70 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 LINC00337Q8N6G1 96 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 TSKUQ8WUA8 353 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 IMMP2LQ96T52 175 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 PYGO1Q9Y3Y4 419 aa2.65□□□□□ -1.99
USP4-209ENST00000475873 UMAD1C9J7I0 102 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 C8orf87E5RJ46 101 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 F8W1H4 67 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 H3BRM9 83 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 SSSCA1O60232 199 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 TPT1P13693 172 aaKnown RBP2.64□□□□□ -1.99
USP4-209ENST00000475873 TAS2R45P59539 299 aa2.64□□□□□ -1.99
USP4-209ENST00000475873 SYCNQ0VAF6 134 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms