RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 PRM2P04554 102 aa4.32□□□□□ -1.72
HERC4-209ENST00000473533 C18orf65Q6ZTR6 163 aa4.32□□□□□ -1.72
HERC4-209ENST00000473533 Q96MF0 132 aa4.32□□□□□ -1.72
HERC4-209ENST00000473533 UBL5Q9BZL1 73 aa4.32□□□□□ -1.72
HERC4-209ENST00000473533 C14orf132Q9NPU4 83 aa4.32□□□□□ -1.72
HERC4-209ENST00000473533 PDE6GP18545 87 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 KIR2DL5BQ8NHK3 375 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 IGSF10Q6WRI0 2623 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 A0A087WYN8 130 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 LINC00959A0A1B0GUT2 108 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 DEFB113Q30KQ7 82 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 C22orf24Q9Y442 160 aa4.31□□□□□ -1.72
HERC4-209ENST00000473533 PFN2P35080 140 aa4.3□□□□□ -1.72
HERC4-209ENST00000473533 IGKV3OR2-268A0A0C4DH90 116 aa4.3□□□□□ -1.72
HERC4-209ENST00000473533 SMIM9A6NGZ8 99 aa4.3□□□□□ -1.72
HERC4-209ENST00000473533 USP17L23D6RBM5 183 aa4.3□□□□□ -1.72
HERC4-209ENST00000473533 C2orf48Q96LS8 159 aa4.3□□□□□ -1.72
HERC4-209ENST00000473533 HRNRQ86YZ3 2850 aaPredicted RBP4.29□□□□□ -1.72
HERC4-209ENST00000473533 FHL2Q14192 279 aa4.29□□□□□ -1.72
HERC4-209ENST00000473533 HELZ2Q9BYK8 2649 aaKnown RBP4.29□□□□□ -1.72
HERC4-209ENST00000473533 C5orf47Q569G3 176 aa4.29□□□□□ -1.72
HERC4-209ENST00000473533 LINC00846Q9NV44 126 aa4.29□□□□□ -1.72
HERC4-209ENST00000473533 DOPEY1Q5JWR5 2465 aa4.29□□□□□ -1.72
HERC4-209ENST00000473533 Q8N814 137 aa4.29□□□□□ -1.72
HERC4-209ENST00000473533 TEX15Q9BXT5 2789 aa4.29□□□□□ -1.72
HERC4-209ENST00000473533 IGKV3D-7A0A0C4DH55 119 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 C16orf95Q9H693 158 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 IGLV4-60A0A075B6I1 120 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 PLAC8L1A1L4L8 177 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 IGLV1-51P01701 117 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 CD164L2Q6UWJ8 174 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 PRO0255Q9UI72 69 aa4.28□□□□□ -1.72
HERC4-209ENST00000473533 BSNQ9UPA5 3926 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 IGHV4-28A0A0C4DH34 117 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 DNAJC9-AS1A6NH13 148 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 NCR3O14931 201 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 ZNF561-AS1K7EIQ3 104 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 RPL35AP18077 110 aaKnown RBP4.27□□□□□ -1.73
HERC4-209ENST00000473533 LINC00612Q8N6U2 182 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 MAPK1IP1LQ8NDC0 245 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 LYPD5Q6UWN5 251 aa4.27□□□□□ -1.73
HERC4-209ENST00000473533 ZNF462Q96JM2 2506 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 LOC100131303A0A0U1RQF7 123 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 LYRM9A8MSI8 78 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 GYPEP15421 78 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 XCL1P47992 114 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 CSNK1G2-AS1Q8NCQ2 148 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 CFAP46Q8IYW2 2715 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 TENM4Q6N022 2769 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 LOC110117498A0A087WWA1 95 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 RBM3P98179 157 aaKnown RBP4.26□□□□□ -1.73
HERC4-209ENST00000473533 C3orf56Q8N813 242 aa4.26□□□□□ -1.73
HERC4-209ENST00000473533 GIG44P09565 113 aaPredicted RBP4.25□□□□□ -1.73
HERC4-209ENST00000473533 DSCR8Q96T75 97 aa4.25□□□□□ -1.73
HERC4-209ENST00000473533 LOC107984640A0A0U1RRK4 108 aa4.25□□□□□ -1.73
HERC4-209ENST00000473533 RNASE1P07998 156 aaKnown RBP4.25□□□□□ -1.73
HERC4-209ENST00000473533 BBC3Q96PG8 261 aaPredicted RBP4.24□□□□□ -1.73
HERC4-209ENST00000473533 UPK3BQ9BT76 320 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 TRAV7A0A075B6U4 112 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 LINC00575Q6W349 94 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 FAM19A5Q7Z5A7 132 aaPredicted RBP4.24□□□□□ -1.73
HERC4-209ENST00000473533 DPH3Q96FX2 82 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 C19orf73Q9NVV2 129 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 NDUFC1O43677 76 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 SLPIP03973 132 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 DEFB130BP0DP73 79 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 DEFB130AP0DP74 79 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 CXCL6P80162 114 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 C6orf223Q8N319 242 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 C11orf68Q9H3H3 251 aaKnown RBP4.24□□□□□ -1.73
HERC4-209ENST00000473533 LAMTOR3Q9UHA4 124 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 MAST4O15021 2626 aa4.24□□□□□ -1.73
HERC4-209ENST00000473533 ATP5EP56381 51 aaPredicted RBP4.23□□□□□ -1.73
HERC4-209ENST00000473533 CHCHD10Q8WYQ3 142 aaPredicted RBP4.23□□□□□ -1.73
HERC4-209ENST00000473533 CYSRT1A8MQ03 144 aa4.23□□□□□ -1.73
HERC4-209ENST00000473533 TRBV7-6A0A0J9YX20 115 aa4.23□□□□□ -1.73
HERC4-209ENST00000473533 C6orf99Q4VX62 202 aa4.23□□□□□ -1.73
HERC4-209ENST00000473533 REG3AQ06141 175 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 C9orf66Q5T8R8 295 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.22□□□□□ -1.73
HERC4-209ENST00000473533 CR1P17927 2039 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 A0A087WVE0 104 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 GVQW2A0A096LPI5 108 aaPredicted RBP4.22□□□□□ -1.73
HERC4-209ENST00000473533 ANGP03950 147 aaKnown RBP4.22□□□□□ -1.73
HERC4-209ENST00000473533 PRB1P04280 392 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 KIAA0087Q14695 138 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 C9orf129Q5T035 196 aaKnown RBP4.22□□□□□ -1.73
HERC4-209ENST00000473533 Q6ZQT0 140 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 LINC01006Q8NI28 216 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 A0A0J9YWU9 116 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 FAM236DA0A1B0GTK5 79 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 IGHV4-30-4P0DP06 118 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 FAM236CP0DP71 79 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 APOC4P55056 127 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 NANOS2P60321 138 aaKnown RBP4.22□□□□□ -1.73
HERC4-209ENST00000473533 ENHOQ6UWT2 76 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 DIRC1Q969H9 104 aa4.22□□□□□ -1.73
HERC4-209ENST00000473533 SPAG11BQ08648 103 aa4.21□□□□□ -1.74
HERC4-209ENST00000473533 LINC00269Q8N2A0 174 aa4.21□□□□□ -1.74
HERC4-209ENST00000473533 MXRA5Q9NR99 2828 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms