RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 PNRC1Q12796 327 aaPredicted RBP10.39□□□□□ -0.75
SHH-205ENST00000472308 TEX43Q6ZNM6 134 aa10.39□□□□□ -0.75
SHH-205ENST00000472308 FAM74A3Q4VXF1 159 aa10.38□□□□□ -0.75
SHH-205ENST00000472308 SLC51BQ86UW2 128 aa10.38□□□□□ -0.75
SHH-205ENST00000472308 IGLV5-37A0A075B6J1 123 aa10.37□□□□□ -0.75
SHH-205ENST00000472308 PRLHP81277 87 aa10.37□□□□□ -0.75
SHH-205ENST00000472308 AMELXQ99217 191 aa10.36□□□□□ -0.75
SHH-205ENST00000472308 C2orf88Q9BSF0 95 aa10.36□□□□□ -0.75
SHH-205ENST00000472308 SEC61BP60468 96 aaKnown RBP10.35□□□□□ -0.75
SHH-205ENST00000472308 BATF3Q9NR55 127 aa10.35□□□□□ -0.75
SHH-205ENST00000472308 IGKV2-28A0A075B6P5 120 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 SMIM27A0A1W2PRY6 76 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 SCO1O75880 301 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 IGKV2D-28P01615 120 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 RAB5AP20339 215 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 KRTAP19-2Q3LHN2 52 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 FAM19A3Q7Z5A8 133 aa10.34□□□□□ -0.75
SHH-205ENST00000472308 A0A1B0GW15 77 aa10.33□□□□□ -0.76
SHH-205ENST00000472308 SPAG11AQ6PDA7 123 aa10.33□□□□□ -0.76
SHH-205ENST00000472308 CDKN2A-AS1Q9UH64 79 aa10.33□□□□□ -0.76
SHH-205ENST00000472308 MT1HP80294 61 aa10.32□□□□□ -0.76
SHH-205ENST00000472308 C2orf66Q6UXQ4 117 aa10.32□□□□□ -0.76
SHH-205ENST00000472308 PLEKHB2Q96CS7 222 aa10.32□□□□□ -0.76
SHH-205ENST00000472308 PPBPP02775 128 aa10.31□□□□□ -0.76
SHH-205ENST00000472308 NKAPP1Q8N9T2 125 aa10.31□□□□□ -0.76
SHH-205ENST00000472308 A0A1B0GXF2 115 aa10.3□□□□□ -0.76
SHH-205ENST00000472308 SRP19P09132 144 aaKnown RBP10.3□□□□□ -0.76
SHH-205ENST00000472308 CXCL5P42830 114 aa10.3□□□□□ -0.76
SHH-205ENST00000472308 MRPL54Q6P161 138 aaKnown RBP10.3□□□□□ -0.76
SHH-205ENST00000472308 VCX2Q9H322 139 aa10.3□□□□□ -0.76
SHH-205ENST00000472308 TMEM238C9JI98 176 aa10.29□□□□□ -0.76
SHH-205ENST00000472308 F8W036 122 aa10.29□□□□□ -0.76
SHH-205ENST00000472308 RPL23P62829 140 aaKnown RBP10.29□□□□□ -0.76
SHH-205ENST00000472308 BLOC1S1P78537 153 aa10.29□□□□□ -0.76
SHH-205ENST00000472308 FAM19A1Q7Z5A9 133 aa10.29□□□□□ -0.76
SHH-205ENST00000472308 TMEM126AQ9H061 195 aa10.29□□□□□ -0.76
SHH-205ENST00000472308 ALKAL2Q6UX46 152 aa10.28□□□□□ -0.76
SHH-205ENST00000472308 ORMDL3Q8N138 153 aa10.28□□□□□ -0.76
SHH-205ENST00000472308 CYSLTR1Q9Y271 337 aa10.28□□□□□ -0.76
SHH-205ENST00000472308 IGIPA6NJ69 53 aa10.27□□□□□ -0.77
SHH-205ENST00000472308 HERVK_113P63121 156 aa10.27□□□□□ -0.77
SHH-205ENST00000472308 PRELID3AQ96N28 172 aa10.27□□□□□ -0.77
SHH-205ENST00000472308 SMIM1B2RUZ4 78 aa10.26□□□□□ -0.77
SHH-205ENST00000472308 TMEM136Q6ZRR5 245 aa10.26□□□□□ -0.77
SHH-205ENST00000472308 LOC389332A0A1B0GUA5 103 aa10.25□□□□□ -0.77
SHH-205ENST00000472308 PRSS47A8MTI9 375 aa10.25□□□□□ -0.77
SHH-205ENST00000472308 M0R378 163 aa10.25□□□□□ -0.77
SHH-205ENST00000472308 S100A8P05109 93 aa10.25□□□□□ -0.77
SHH-205ENST00000472308 LORP23490 312 aaPredicted RBP10.25□□□□□ -0.77
SHH-205ENST00000472308 NPSP0C0P6 89 aa10.24□□□□□ -0.77
SHH-205ENST00000472308 RAB5BP61020 215 aa10.24□□□□□ -0.77
SHH-205ENST00000472308 ADIRFQ15847 76 aa10.24□□□□□ -0.77
SHH-205ENST00000472308 DAND5Q8N907 189 aa10.24□□□□□ -0.77
SHH-205ENST00000472308 CFC1BP0CG36 223 aa10.23□□□□□ -0.77
SHH-205ENST00000472308 CBLN2Q8IUK8 224 aa10.23□□□□□ -0.77
SHH-205ENST00000472308 TCTE3Q8IZS6 198 aa10.23□□□□□ -0.77
SHH-205ENST00000472308 Q8NBF4 154 aa10.23□□□□□ -0.77
SHH-205ENST00000472308 SPRR4Q96PI1 79 aa10.23□□□□□ -0.77
SHH-205ENST00000472308 GEMIN7Q9H840 131 aaKnown RBP10.23□□□□□ -0.77
SHH-205ENST00000472308 SEC11AP67812 179 aa10.22□□□□□ -0.77
SHH-205ENST00000472308 C4orf48Q5BLP8 95 aa10.22□□□□□ -0.77
SHH-205ENST00000472308 XP32Q5T750 250 aa10.22□□□□□ -0.77
SHH-205ENST00000472308 COX7B2Q8TF08 81 aa10.22□□□□□ -0.77
SHH-205ENST00000472308 VPREB1P12018 145 aa10.21□□□□□ -0.77
SHH-205ENST00000472308 KRTAP10-6P60371 365 aaPredicted RBP10.2□□□□□ -0.78
SHH-205ENST00000472308 PDZD11Q5EBL8 140 aa10.2□□□□□ -0.78
SHH-205ENST00000472308 Q8N8P6 123 aa10.2□□□□□ -0.78
SHH-205ENST00000472308 HIGD2AQ9BW72 106 aa10.2□□□□□ -0.78
SHH-205ENST00000472308 GNB1LQ9BYB4 327 aa10.2□□□□□ -0.78
SHH-205ENST00000472308 MAP1LC3AQ9H492 121 aa10.2□□□□□ -0.78
SHH-205ENST00000472308 Q8NDZ9 215 aa10.18□□□□□ -0.78
SHH-205ENST00000472308 NAT8Q9UHE5 227 aa10.18□□□□□ -0.78
SHH-205ENST00000472308 LAMTOR2Q9Y2Q5 125 aa10.18□□□□□ -0.78
SHH-205ENST00000472308 KRTAP9-7A8MTY7 169 aa10.17□□□□□ -0.78
SHH-205ENST00000472308 C9JQL5 133 aa10.17□□□□□ -0.78
SHH-205ENST00000472308 SPINK1P00995 79 aa10.17□□□□□ -0.78
SHH-205ENST00000472308 ORMDL2Q53FV1 153 aa10.17□□□□□ -0.78
SHH-205ENST00000472308 IGLV5-45A0A087WSX0 123 aa10.16□□□□□ -0.78
SHH-205ENST00000472308 PAPPA-AS1Q5QFB9 102 aa10.15□□□□□ -0.78
SHH-205ENST00000472308 TIMM17AQ99595 171 aa10.15□□□□□ -0.78
SHH-205ENST00000472308 A0A1B0GVG6 124 aa10.14□□□□□ -0.79
SHH-205ENST00000472308 SPINK8P0C7L1 97 aa10.14□□□□□ -0.79
SHH-205ENST00000472308 ATP5L2Q7Z4Y8 100 aa10.14□□□□□ -0.79
SHH-205ENST00000472308 Q8N377 158 aa10.14□□□□□ -0.79
SHH-205ENST00000472308 SND1-IT1Q9HBX3 110 aa10.14□□□□□ -0.79
SHH-205ENST00000472308 TINCRA0A1B0GVN0 87 aa10.13□□□□□ -0.79
SHH-205ENST00000472308 KRTAP9-1A8MXZ3 250 aaPredicted RBP10.13□□□□□ -0.79
SHH-205ENST00000472308 PFN2P35080 140 aa10.13□□□□□ -0.79
SHH-205ENST00000472308 K7EMI3 77 aa10.12□□□□□ -0.79
SHH-205ENST00000472308 NDUFA12Q9UI09 145 aa10.12□□□□□ -0.79
SHH-205ENST00000472308 FLGP20930 4061 aaPredicted RBP10.12□□□□□ -0.79
SHH-205ENST00000472308 ATP5LO75964 103 aa10.11□□□□□ -0.79
SHH-205ENST00000472308 TOMM6Q96B49 74 aa10.11□□□□□ -0.79
SHH-205ENST00000472308 ZNF706Q9Y5V0 76 aaPredicted RBP10.11□□□□□ -0.79
SHH-205ENST00000472308 RAB14P61106 215 aa10.09□□□□□ -0.79
SHH-205ENST00000472308 RPL24P83731 157 aaKnown RBP10.09□□□□□ -0.79
SHH-205ENST00000472308 ADCYAP1P18509 176 aa10.08□□□□□ -0.8
SHH-205ENST00000472308 RPS29P62273 56 aaKnown RBP10.08□□□□□ -0.8
SHH-205ENST00000472308 FAM19A2Q8N3H0 131 aa10.08□□□□□ -0.8
SHH-205ENST00000472308 ERASQ7Z444 233 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms