RNA–Protein interactions for RNA: ENST00000471342.1

SF3A1-207, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 459 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-207ENST00000471342 PANO1I0J062 215 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 LEPROTO15243 131 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 KRTAP7-1Q8IUC3 87 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 PCP2Q8IVA1 136 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 ORAOV1Q8WV07 137 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 C2orf48Q96LS8 159 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 LITAFQ99732 161 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 FAT1Q14517 4588 aa6.36□□□□□ -1.39
SF3A1-207ENST00000471342 EIF4EBP3O60516 100 aaPredicted RBP6.35□□□□□ -1.39
SF3A1-207ENST00000471342 SPAG11BQ08648 103 aa6.35□□□□□ -1.39
SF3A1-207ENST00000471342 C9orf116Q5BN46 136 aaPredicted RBP6.35□□□□□ -1.39
SF3A1-207ENST00000471342 SDIM1Q6ZPB5 146 aa6.35□□□□□ -1.39
SF3A1-207ENST00000471342 COX7B2Q8TF08 81 aa6.35□□□□□ -1.39
SF3A1-207ENST00000471342 KRTAP17-1Q9BYP8 105 aa6.35□□□□□ -1.39
SF3A1-207ENST00000471342 HERC2O95714 4834 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 EPM2AB3EWF7 344 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 SCGB1D1O95968 90 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 LINC01620Q4KN68 170 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 C9orf163Q8N9P6 203 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 Q8NDZ9 215 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 PLEKHB2Q96CS7 222 aa6.34□□□□□ -1.39
SF3A1-207ENST00000471342 J3QQQ9 107 aa6.33□□□□□ -1.4
SF3A1-207ENST00000471342 LINC00336Q6ZUF6 198 aa6.33□□□□□ -1.4
SF3A1-207ENST00000471342 FAM30AQ9NZY2 134 aa6.33□□□□□ -1.4
SF3A1-207ENST00000471342 H3BRM9 83 aa6.32□□□□□ -1.4
SF3A1-207ENST00000471342 NDUFA1O15239 70 aa6.32□□□□□ -1.4
SF3A1-207ENST00000471342 KRTAP10-1P60331 282 aa6.32□□□□□ -1.4
SF3A1-207ENST00000471342 ADAMTSL4-AS1Q5T5F5 129 aa6.32□□□□□ -1.4
SF3A1-207ENST00000471342 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.31□□□□□ -1.4
SF3A1-207ENST00000471342 C20orf202A1L168 122 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 PSCAO43653 123 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 TLX1NBP0CAT3 122 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 MALP21145 153 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 AKR1D1P51857 326 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 SYCNQ0VAF6 134 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 CIRBPQ14011 172 aaKnown RBP6.31□□□□□ -1.4
SF3A1-207ENST00000471342 RNF151Q2KHN1 245 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 CFAP161Q6P656 301 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 Q6ZRP5 223 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 Q6ZSA8 131 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 C2orf91Q6ZV80 131 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 BOD1L2Q8IYS8 172 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 LINC00518Q8N0U6 118 aa6.31□□□□□ -1.4
SF3A1-207ENST00000471342 A0A0J9YXY3 114 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 F8WDY8 70 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 APOMO95445 188 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 SOSTDC1Q6X4U4 206 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 TOMM7Q9P0U1 55 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 NDUFA12Q9UI09 145 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 PAM16Q9Y3D7 125 aa6.3□□□□□ -1.4
SF3A1-207ENST00000471342 VPS13BQ7Z7G8 4022 aa6.29□□□□□ -1.4
SF3A1-207ENST00000471342 SMIM6P0DI80 62 aa6.29□□□□□ -1.4
SF3A1-207ENST00000471342 COX8AP10176 69 aa6.29□□□□□ -1.4
SF3A1-207ENST00000471342 C6orf226Q5I0X4 101 aa6.29□□□□□ -1.4
SF3A1-207ENST00000471342 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.29□□□□□ -1.4
SF3A1-207ENST00000471342 LOC107984156A0A0G2JMH3 177 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 TRBV30A0A0K0K1B3 111 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 DLEU1O43261 78 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 SPATA45Q537H7 98 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 C9orf129Q5T035 196 aaKnown RBP6.28□□□□□ -1.4
SF3A1-207ENST00000471342 ARL17AQ8IVW1 177 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 C14orf144Q96I85 54 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 CARD19Q96LW7 228 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 CAMK2N2Q96S95 79 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 PGPEP1Q9NXJ5 209 aa6.28□□□□□ -1.4
SF3A1-207ENST00000471342 A0A096LNI7 61 aa6.27□□□□□ -1.41
SF3A1-207ENST00000471342 MYMXA0A1B0GTQ4 84 aa6.27□□□□□ -1.41
SF3A1-207ENST00000471342 ZNF561-AS1K7EIQ3 104 aa6.27□□□□□ -1.41
SF3A1-207ENST00000471342 CHTF8P0CG12 524 aa6.27□□□□□ -1.41
SF3A1-207ENST00000471342 CXCL5P42830 114 aa6.27□□□□□ -1.41
SF3A1-207ENST00000471342 C14orf177Q52M58 125 aa6.27□□□□□ -1.41
SF3A1-207ENST00000471342 A0A1W2PNN7 141 aa6.26□□□□□ -1.41
SF3A1-207ENST00000471342 SMIM13P0DJ93 91 aa6.26□□□□□ -1.41
SF3A1-207ENST00000471342 NMUP48645 174 aa6.26□□□□□ -1.41
SF3A1-207ENST00000471342 ZNF815PA8K554 130 aa6.25□□□□□ -1.41
SF3A1-207ENST00000471342 XGP55808 180 aa6.25□□□□□ -1.41
SF3A1-207ENST00000471342 HERVK_113P61574 105 aa6.25□□□□□ -1.41
SF3A1-207ENST00000471342 KRTAP11-1Q8IUC1 163 aa6.25□□□□□ -1.41
SF3A1-207ENST00000471342 VAMP8Q9BV40 100 aa6.25□□□□□ -1.41
SF3A1-207ENST00000471342 ERG28Q9UKR5 140 aa6.25□□□□□ -1.41
SF3A1-207ENST00000471342 IGLV5-52A0A0A0MRZ9 124 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 FAM168BA1KXE4 195 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 NDUFC2-KCTD14E9PQ53 114 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 TIMM17BO60830 172 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 PTTG1IPP53801 180 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 HERV-K104P63124 156 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 DAND5Q8N907 189 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 SPACA4Q8TDM5 124 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 C12orf57Q99622 126 aa6.24□□□□□ -1.41
SF3A1-207ENST00000471342 C16orf90A8MZG2 172 aa6.23□□□□□ -1.41
SF3A1-207ENST00000471342 PRSS2P07478 247 aa6.23□□□□□ -1.41
SF3A1-207ENST00000471342 LGALS3P17931 250 aaKnown RBP6.23□□□□□ -1.41
SF3A1-207ENST00000471342 CKS1BP61024 79 aa6.23□□□□□ -1.41
SF3A1-207ENST00000471342 SERTAD4-AS1Q5TG53 156 aa6.23□□□□□ -1.41
SF3A1-207ENST00000471342 SND1-IT1Q9HBX3 110 aa6.23□□□□□ -1.41
SF3A1-207ENST00000471342 ABCA13Q86UQ4 5058 aa6.23□□□□□ -1.41
SF3A1-207ENST00000471342 GCSHP23434 173 aa6.22□□□□□ -1.41
SF3A1-207ENST00000471342 COX17Q14061 63 aa6.22□□□□□ -1.41
SF3A1-207ENST00000471342 MIR7-3HGQ8N6C7 128 aa6.22□□□□□ -1.41
SF3A1-207ENST00000471342 SPANXDQ9BXN6 97 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms