RNA–Protein interactions for RNA: ENST00000470268.1

SF3B1-208, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 2,003 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-208ENST00000470268 IGKCP01834 107 aa3.19□□□□□ -1.9
SF3B1-208ENST00000470268 SMAGPQ0VAQ4 97 aa3.19□□□□□ -1.9
SF3B1-208ENST00000470268 TMEM97Q5BJF2 176 aa3.19□□□□□ -1.9
SF3B1-208ENST00000470268 MAPKAPK5-AS1Q8N8E1 139 aa3.19□□□□□ -1.9
SF3B1-208ENST00000470268 UPK3BQ9BT76 320 aa3.19□□□□□ -1.9
SF3B1-208ENST00000470268 IGLV4-69A0A075B6H9 119 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 IGHV3-30P01768 117 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 IGHV3-33P01772 117 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 IGHV3-30-3P0DP02 117 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 IGHV3-30-5P0DP03 117 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 COX8AP10176 69 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 KRTAP10-7P60409 375 aaPredicted RBP3.18□□□□□ -1.9
SF3B1-208ENST00000470268 CKS1BP61024 79 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 SEC11AP67812 179 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 Q9H8V8 135 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 CYSLTR1Q9Y271 337 aa3.18□□□□□ -1.9
SF3B1-208ENST00000470268 KMT2CQ8NEZ4 4911 aaKnown RBP3.18□□□□□ -1.9
SF3B1-208ENST00000470268 SACSQ9NZJ4 4579 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 IGLV4-3A0A075B6K6 122 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 A0A1B0GUV1 79 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 C11orf86A6NJI1 115 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 H3BRM9 83 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 H7C423 109 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 UBE2L6O14933 153 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 ATP5LO75964 103 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 DPM2O94777 84 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 DNAH10OSP0CZ25 163 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 HSD52Q0P140 79 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 LINC01556Q5JQF7 62 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 Q6ZUT4 128 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 UBE2DNLQ8IWF7 75 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 SMIM20Q8N5G0 67 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 CDC42SE2Q9NRR3 84 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 PYGO1Q9Y3Y4 419 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 IGHV3-64A0A075B6Q5 118 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 F8VRH5 84 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 H3BUT2 72 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 LY6G6CO95867 125 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 RPL24P83731 157 aaKnown RBP3.17□□□□□ -1.9
SF3B1-208ENST00000470268 CLPSL2Q6UWE3 100 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 OR5A1Q8NGJ0 315 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 TIMM17AQ99595 171 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 NAA38Q9BRA0 125 aaKnown RBP3.17□□□□□ -1.9
SF3B1-208ENST00000470268 TIMM21Q9BVV7 248 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 SPANXA1Q9NS26 97 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 KLK12Q9UKR0 248 aa3.17□□□□□ -1.9
SF3B1-208ENST00000470268 TRAV12-1A0A0B4J245 112 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 A0A0J9YXV3 536 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 A6NDN8 102 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 ANGP03950 147 aaKnown RBP3.16□□□□□ -1.9
SF3B1-208ENST00000470268 TSPEAR-AS2P59090 65 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 ENHOQ6UWT2 76 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 LINC00269Q8N2A0 174 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 AMELXQ99217 191 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 PRR34Q9NV39 138 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 SPCS1Q9Y6A9 102 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 V9GYY9 64 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 DNAH10Q8IVF4 4471 aa3.16□□□□□ -1.9
SF3B1-208ENST00000470268 IGKV3OR2-268A0A0C4DH90 116 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 M0R2N4 97 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 MRPS36P82909 103 aaKnown RBP3.15□□□□□ -1.9
SF3B1-208ENST00000470268 REG3AQ06141 175 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 PMVKQ15126 192 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 PLEKHB2Q96CS7 222 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 TMEM141Q96I45 108 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 SS18L2Q9UHA2 77 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 DNAH2Q9P225 4427 aa3.15□□□□□ -1.9
SF3B1-208ENST00000470268 ALMS1Q8TCU4 4167 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 IGLV10-54A0A075B6I4 117 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 NBDYA0A0U1RRE5 68 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 A0A1W2PPM0 123 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 IBA57-AS1B1ANH7 110 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 FABP2P12104 132 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 TMEM170BQ5T4T1 132 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 Q6ZR54 194 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 UBE2WQ96B02 151 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 TMEM101Q96IK0 257 aa3.15□□□□□ -1.91
SF3B1-208ENST00000470268 TRAV13-1A0A0B4J241 112 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 LINC00959A0A1B0GUT2 108 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 LINC01549A6NIU2 74 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 K7ERJ3 54 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 PLNP26678 52 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 KRTAP26-1Q6PEX3 210 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 RAB37Q96AX2 223 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 CHAC1Q9BUX1 264 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 RYR2Q92736 4967 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 TRAV8-3A0A0A6YYJ7 113 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 LCE6AA0A183 80 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 J3QR89 54 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 UBE2D1P51668 147 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 FXYD2P54710 66 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 COX6A2Q02221 97 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 LINC00242Q5T6M2 205 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 Q9HAA7 133 aa3.14□□□□□ -1.91
SF3B1-208ENST00000470268 ZNF22P17026 224 aaPredicted RBP3.13□□□□□ -1.91
SF3B1-208ENST00000470268 LINC01620Q4KN68 170 aa3.13□□□□□ -1.91
SF3B1-208ENST00000470268 Q6ZRN7 208 aaPredicted RBP3.13□□□□□ -1.91
SF3B1-208ENST00000470268 C10orf126Q8N4M7 172 aa3.13□□□□□ -1.91
SF3B1-208ENST00000470268 CHCHD10Q8WYQ3 142 aaPredicted RBP3.13□□□□□ -1.91
SF3B1-208ENST00000470268 SPANXB1Q9NS25 103 aaPredicted RBP3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 178.5 ms