RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 FABP4P15090 132 aa11.97□□□□□ -0.49
COL7A1-207ENST00000467985 PTTG1IPP53801 180 aa11.97□□□□□ -0.49
COL7A1-207ENST00000467985 F8WDY8 70 aa11.96□□□□□ -0.49
COL7A1-207ENST00000467985 PRR3P79522 188 aaKnown RBP11.96□□□□□ -0.49
COL7A1-207ENST00000467985 SPAG11BQ08648 103 aa11.96□□□□□ -0.49
COL7A1-207ENST00000467985 IFI27L1Q96BM0 104 aa11.96□□□□□ -0.49
COL7A1-207ENST00000467985 IGHV3OR16-9A0A0B4J2B5 98 aa11.95□□□□□ -0.5
COL7A1-207ENST00000467985 S100A2P29034 98 aa11.95□□□□□ -0.5
COL7A1-207ENST00000467985 TMA7Q9Y2S6 64 aaKnown RBP11.95□□□□□ -0.5
COL7A1-207ENST00000467985 HMCN2Q8NDA2 5059 aa11.94□□□□□ -0.5
COL7A1-207ENST00000467985 GAGE2BQ13066 116 aa11.94□□□□□ -0.5
COL7A1-207ENST00000467985 PMVKQ15126 192 aa11.94□□□□□ -0.5
COL7A1-207ENST00000467985 RNF151Q2KHN1 245 aa11.94□□□□□ -0.5
COL7A1-207ENST00000467985 ZC2HC1BQ5TFG8 222 aa11.94□□□□□ -0.5
COL7A1-207ENST00000467985 H0Y8G0 127 aa11.93□□□□□ -0.5
COL7A1-207ENST00000467985 ORAOV1Q8WV07 137 aa11.93□□□□□ -0.5
COL7A1-207ENST00000467985 AMELXQ99217 191 aa11.93□□□□□ -0.5
COL7A1-207ENST00000467985 LINC00173Q6ZV60 143 aa11.92□□□□□ -0.5
COL7A1-207ENST00000467985 MAP1LC3CQ9BXW4 147 aa11.91□□□□□ -0.5
COL7A1-207ENST00000467985 CST9LQ9H4G1 147 aa11.91□□□□□ -0.5
COL7A1-207ENST00000467985 NDUFA1O15239 70 aa11.9□□□□□ -0.5
COL7A1-207ENST00000467985 UBE2D1P51668 147 aa11.9□□□□□ -0.5
COL7A1-207ENST00000467985 SNRPEP62304 92 aaKnown RBP11.9□□□□□ -0.5
COL7A1-207ENST00000467985 SEC11AP67812 179 aa11.9□□□□□ -0.5
COL7A1-207ENST00000467985 Q6ZRP5 223 aa11.9□□□□□ -0.5
COL7A1-207ENST00000467985 PACRGQ96M98 296 aaPredicted RBP11.9□□□□□ -0.5
COL7A1-207ENST00000467985 GEMIN7Q9H840 131 aaKnown RBP11.9□□□□□ -0.5
COL7A1-207ENST00000467985 MRPL35Q9NZE8 188 aaKnown RBP11.9□□□□□ -0.5
COL7A1-207ENST00000467985 MT1HL1P0DM35 61 aa11.89□□□□□ -0.51
COL7A1-207ENST00000467985 RPL18AQ02543 176 aaKnown RBP11.89□□□□□ -0.51
COL7A1-207ENST00000467985 A0A087WZ39 114 aa11.88□□□□□ -0.51
COL7A1-207ENST00000467985 HIST3H2BBQ8N257 126 aa11.88□□□□□ -0.51
COL7A1-207ENST00000467985 LINC00242Q5T6M2 205 aa11.87□□□□□ -0.51
COL7A1-207ENST00000467985 PLA2G2DQ9UNK4 145 aa11.87□□□□□ -0.51
COL7A1-207ENST00000467985 CHTOPQ9Y3Y2 248 aaKnown RBP11.87□□□□□ -0.51
COL7A1-207ENST00000467985 TRAV12-1A0A0B4J245 112 aa11.86□□□□□ -0.51
COL7A1-207ENST00000467985 A0A0J9YXV3 536 aa11.86□□□□□ -0.51
COL7A1-207ENST00000467985 HERVK_113P63121 156 aa11.86□□□□□ -0.51
COL7A1-207ENST00000467985 SPINK6Q6UWN8 80 aa11.86□□□□□ -0.51
COL7A1-207ENST00000467985 A0A1W2PNN7 141 aa11.85□□□□□ -0.51
COL7A1-207ENST00000467985 KRTDAPP60985 99 aa11.85□□□□□ -0.51
COL7A1-207ENST00000467985 C9orf116Q5BN46 136 aaPredicted RBP11.85□□□□□ -0.51
COL7A1-207ENST00000467985 TINCRA0A1B0GVN0 87 aa11.84□□□□□ -0.51
COL7A1-207ENST00000467985 C5orf52A6NGY3 159 aa11.84□□□□□ -0.51
COL7A1-207ENST00000467985 TLX1NBP0CAT3 122 aa11.84□□□□□ -0.51
COL7A1-207ENST00000467985 LINC01561Q8N1V8 128 aa11.84□□□□□ -0.51
COL7A1-207ENST00000467985 LINC00469Q8N7U9 141 aa11.84□□□□□ -0.51
COL7A1-207ENST00000467985 REG3GQ6UW15 175 aa11.83□□□□□ -0.52
COL7A1-207ENST00000467985 UNQ6190/PRO20217Q6UXQ8 127 aa11.83□□□□□ -0.52
COL7A1-207ENST00000467985 LINC01600Q96MT4 127 aa11.83□□□□□ -0.52
COL7A1-207ENST00000467985 HIST1H2BLQ99880 126 aa11.83□□□□□ -0.52
COL7A1-207ENST00000467985 F8VRH5 84 aa11.82□□□□□ -0.52
COL7A1-207ENST00000467985 SYS1-DBNDD2H3BUS1 97 aa11.82□□□□□ -0.52
COL7A1-207ENST00000467985 KIAA0087Q14695 138 aa11.82□□□□□ -0.52
COL7A1-207ENST00000467985 C10orf25Q5T742 122 aa11.82□□□□□ -0.52
COL7A1-207ENST00000467985 FAM19A3Q7Z5A8 133 aa11.82□□□□□ -0.52
COL7A1-207ENST00000467985 IGLC3P0DOY3 106 aa11.81□□□□□ -0.52
COL7A1-207ENST00000467985 SRSF9Q13242 221 aaKnown RBP eCLIP11.81□□□□□ -0.52
COL7A1-207ENST00000467985 ODF1Q14990 250 aa11.81□□□□□ -0.52
COL7A1-207ENST00000467985 C6orf48Q9UBA6 75 aa11.81□□□□□ -0.52
COL7A1-207ENST00000467985 TRBV30A0A0K0K1B3 111 aa11.8□□□□□ -0.52
COL7A1-207ENST00000467985 C20orf202A1L168 122 aa11.8□□□□□ -0.52
COL7A1-207ENST00000467985 H3BRM9 83 aa11.8□□□□□ -0.52
COL7A1-207ENST00000467985 C3orf79P0CE67 100 aa11.8□□□□□ -0.52
COL7A1-207ENST00000467985 TMEM170BQ5T4T1 132 aa11.8□□□□□ -0.52
COL7A1-207ENST00000467985 PET117Q6UWS5 81 aa11.8□□□□□ -0.52
COL7A1-207ENST00000467985 TNXBP22105 4242 aa11.79□□□□□ -0.52
COL7A1-207ENST00000467985 PMCHL2Q9BQD1 86 aa11.79□□□□□ -0.52
COL7A1-207ENST00000467985 CDKN2A-AS1Q9UH64 79 aa11.79□□□□□ -0.52
COL7A1-207ENST00000467985 C11orf86A6NJI1 115 aa11.78□□□□□ -0.52
COL7A1-207ENST00000467985 DPM2O94777 84 aa11.78□□□□□ -0.52
COL7A1-207ENST00000467985 PLNP26678 52 aa11.78□□□□□ -0.52
COL7A1-207ENST00000467985 PSORS1C2Q9UIG4 136 aa11.78□□□□□ -0.52
COL7A1-207ENST00000467985 PRSS2P07478 247 aa11.77□□□□□ -0.53
COL7A1-207ENST00000467985 PHF5AQ7RTV0 110 aaKnown RBP11.77□□□□□ -0.53
COL7A1-207ENST00000467985 IGKCP01834 107 aa11.76□□□□□ -0.53
COL7A1-207ENST00000467985 ZNF22P17026 224 aaPredicted RBP11.76□□□□□ -0.53
COL7A1-207ENST00000467985 GAGE2EQ4V326 116 aa11.76□□□□□ -0.53
COL7A1-207ENST00000467985 GAGE2DQ9UEU5 116 aa11.76□□□□□ -0.53
COL7A1-207ENST00000467985 IGLV5-45A0A087WSX0 123 aa11.75□□□□□ -0.53
COL7A1-207ENST00000467985 NDUFC2-KCTD14E9PQ53 114 aa11.75□□□□□ -0.53
COL7A1-207ENST00000467985 SPINK8P0C7L1 97 aa11.75□□□□□ -0.53
COL7A1-207ENST00000467985 C2orf82Q6UX34 121 aa11.75□□□□□ -0.53
COL7A1-207ENST00000467985 CKS1BP61024 79 aa11.74□□□□□ -0.53
COL7A1-207ENST00000467985 C6orf226Q5I0X4 101 aa11.74□□□□□ -0.53
COL7A1-207ENST00000467985 LINC01545Q5VT33 79 aa11.74□□□□□ -0.53
COL7A1-207ENST00000467985 TOMM7Q9P0U1 55 aa11.74□□□□□ -0.53
COL7A1-207ENST00000467985 FAM168BA1KXE4 195 aa11.73□□□□□ -0.53
COL7A1-207ENST00000467985 C1orf137Q5JT78 98 aa11.73□□□□□ -0.53
COL7A1-207ENST00000467985 Q8IZM0 81 aa11.73□□□□□ -0.53
COL7A1-207ENST00000467985 AKR1D1P51857 326 aa11.72□□□□□ -0.53
COL7A1-207ENST00000467985 HERVK_113P61574 105 aa11.72□□□□□ -0.53
COL7A1-207ENST00000467985 FAM19A5Q7Z5A7 132 aaPredicted RBP11.72□□□□□ -0.53
COL7A1-207ENST00000467985 SMIM1B2RUZ4 78 aa11.71□□□□□ -0.53
COL7A1-207ENST00000467985 KRTAP10-8P60410 259 aa11.71□□□□□ -0.53
COL7A1-207ENST00000467985 UBR4Q5T4S7 5183 aa11.71□□□□□ -0.54
COL7A1-207ENST00000467985 SCGB1D1O95968 90 aa11.69□□□□□ -0.54
COL7A1-207ENST00000467985 TMEM223A0PJW6 202 aa11.68□□□□□ -0.54
COL7A1-207ENST00000467985 M0QXV9 152 aa11.68□□□□□ -0.54
COL7A1-207ENST00000467985 IGLV7-43P04211 117 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms