RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 PKHD1P08F94 4074 aa9.83□□□□□ -0.84
NPHP4-205ENST00000466897 PKIGQ9Y2B9 76 aa9.83□□□□□ -0.84
NPHP4-205ENST00000466897 TRBV30A0A0K0K1B3 111 aa9.82□□□□□ -0.84
NPHP4-205ENST00000466897 GCSHP23434 173 aa9.82□□□□□ -0.84
NPHP4-205ENST00000466897 CKS1BP61024 79 aa9.82□□□□□ -0.84
NPHP4-205ENST00000466897 Q6ZRU5 148 aa9.82□□□□□ -0.84
NPHP4-205ENST00000466897 C16orf90A8MZG2 172 aa9.81□□□□□ -0.84
NPHP4-205ENST00000466897 E9PLD3 99 aa9.81□□□□□ -0.84
NPHP4-205ENST00000466897 DNAH5Q8TE73 4624 aa9.8□□□□□ -0.84
NPHP4-205ENST00000466897 LEPROTO15243 131 aa9.8□□□□□ -0.84
NPHP4-205ENST00000466897 FUSP35637 526 aaKnown RBP eCLIP9.8□□□□□ -0.84
NPHP4-205ENST00000466897 C2orf82Q6UX34 121 aa9.8□□□□□ -0.84
NPHP4-205ENST00000466897 UNQ6190/PRO20217Q6UXQ8 127 aa9.8□□□□□ -0.84
NPHP4-205ENST00000466897 PLEKHB2Q96CS7 222 aa9.8□□□□□ -0.84
NPHP4-205ENST00000466897 C10orf25Q5T742 122 aa9.79□□□□□ -0.84
NPHP4-205ENST00000466897 C6orf48Q9UBA6 75 aa9.79□□□□□ -0.84
NPHP4-205ENST00000466897 TLX1NBP0CAT3 122 aa9.78□□□□□ -0.84
NPHP4-205ENST00000466897 SDIM1Q6ZPB5 146 aa9.78□□□□□ -0.84
NPHP4-205ENST00000466897 ZNF625Q96I27 306 aaPredicted RBP9.78□□□□□ -0.84
NPHP4-205ENST00000466897 LOC107984640A0A0U1RRK4 108 aa9.76□□□□□ -0.85
NPHP4-205ENST00000466897 J3QQQ9 107 aa9.76□□□□□ -0.85
NPHP4-205ENST00000466897 NMUP48645 174 aa9.76□□□□□ -0.85
NPHP4-205ENST00000466897 KRTAP10-1P60331 282 aa9.76□□□□□ -0.85
NPHP4-205ENST00000466897 JOSD1Q15040 202 aaPredicted RBP9.76□□□□□ -0.85
NPHP4-205ENST00000466897 Q6ZSA8 131 aa9.76□□□□□ -0.85
NPHP4-205ENST00000466897 STPG4Q8N801 248 aa9.76□□□□□ -0.85
NPHP4-205ENST00000466897 SCGB1D1O95968 90 aa9.75□□□□□ -0.85
NPHP4-205ENST00000466897 TSPEAR-AS2P59090 65 aa9.75□□□□□ -0.85
NPHP4-205ENST00000466897 HERV-K104P63124 156 aa9.75□□□□□ -0.85
NPHP4-205ENST00000466897 LINC01620Q4KN68 170 aa9.75□□□□□ -0.85
NPHP4-205ENST00000466897 ATOH7Q8N100 152 aa9.75□□□□□ -0.85
NPHP4-205ENST00000466897 DYNC1H1Q14204 4646 aaKnown RBP9.75□□□□□ -0.85
NPHP4-205ENST00000466897 LGALS3P17931 250 aaKnown RBP9.74□□□□□ -0.85
NPHP4-205ENST00000466897 CIRBPQ14011 172 aaKnown RBP9.74□□□□□ -0.85
NPHP4-205ENST00000466897 NDUFA12Q9UI09 145 aa9.74□□□□□ -0.85
NPHP4-205ENST00000466897 MYMXA0A1B0GTQ4 84 aa9.73□□□□□ -0.85
NPHP4-205ENST00000466897 NDUFC2-KCTD14E9PQ53 114 aa9.73□□□□□ -0.85
NPHP4-205ENST00000466897 COX17Q14061 63 aa9.73□□□□□ -0.85
NPHP4-205ENST00000466897 LINC00474Q9P2X8 69 aa9.73□□□□□ -0.85
NPHP4-205ENST00000466897 IGKV2D-26A0A0A0MRZ7 120 aa9.71□□□□□ -0.86
NPHP4-205ENST00000466897 LINC00587B1AMM8 73 aa9.71□□□□□ -0.86
NPHP4-205ENST00000466897 HSBP1L1C9JCN9 74 aa9.71□□□□□ -0.86
NPHP4-205ENST00000466897 PTTG1IPP53801 180 aa9.71□□□□□ -0.86
NPHP4-205ENST00000466897 ANKRD39Q53RE8 183 aa9.71□□□□□ -0.86
NPHP4-205ENST00000466897 C9orf116Q5BN46 136 aaPredicted RBP9.71□□□□□ -0.86
NPHP4-205ENST00000466897 ERG28Q9UKR5 140 aa9.71□□□□□ -0.86
NPHP4-205ENST00000466897 LRP1BQ9NZR2 4599 aa9.7□□□□□ -0.86
NPHP4-205ENST00000466897 A0A096LNI7 61 aa9.7□□□□□ -0.86
NPHP4-205ENST00000466897 Q6ZRP5 223 aa9.7□□□□□ -0.86
NPHP4-205ENST00000466897 SPACA4Q8TDM5 124 aa9.7□□□□□ -0.86
NPHP4-205ENST00000466897 RPL18AQ02543 176 aaKnown RBP9.69□□□□□ -0.86
NPHP4-205ENST00000466897 PYY3Q5JQD4 70 aa9.69□□□□□ -0.86
NPHP4-205ENST00000466897 CDK2AP2O75956 126 aa9.68□□□□□ -0.86
NPHP4-205ENST00000466897 MAJINQ3KP22 176 aa9.68□□□□□ -0.86
NPHP4-205ENST00000466897 FAM30AQ9NZY2 134 aa9.68□□□□□ -0.86
NPHP4-205ENST00000466897 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.68□□□□□ -0.86
NPHP4-205ENST00000466897 GAGE2BQ13066 116 aa9.67□□□□□ -0.86
NPHP4-205ENST00000466897 DNAH8Q96JB1 4490 aa9.66□□□□□ -0.86
NPHP4-205ENST00000466897 IGKV2-24A0A0C4DH68 120 aa9.66□□□□□ -0.86
NPHP4-205ENST00000466897 ZNF815PA8K554 130 aa9.66□□□□□ -0.86
NPHP4-205ENST00000466897 PANO1I0J062 215 aa9.66□□□□□ -0.86
NPHP4-205ENST00000466897 CHTF8P0CG12 524 aa9.66□□□□□ -0.86
NPHP4-205ENST00000466897 A0A0J9YXY3 114 aa9.65□□□□□ -0.86
NPHP4-205ENST00000466897 EPM2AB3EWF7 344 aa9.65□□□□□ -0.86
NPHP4-205ENST00000466897 PFN2P35080 140 aa9.65□□□□□ -0.86
NPHP4-205ENST00000466897 MEIG1Q5JSS6 88 aa9.65□□□□□ -0.86
NPHP4-205ENST00000466897 VAMP8Q9BV40 100 aa9.65□□□□□ -0.86
NPHP4-205ENST00000466897 TIMM17BO60830 172 aa9.64□□□□□ -0.87
NPHP4-205ENST00000466897 GAGE2EQ4V326 116 aa9.64□□□□□ -0.87
NPHP4-205ENST00000466897 PLAC8Q9NZF1 115 aa9.64□□□□□ -0.87
NPHP4-205ENST00000466897 GAGE2DQ9UEU5 116 aa9.64□□□□□ -0.87
NPHP4-205ENST00000466897 SMIM13P0DJ93 91 aa9.63□□□□□ -0.87
NPHP4-205ENST00000466897 LINC00158P58513 81 aa9.63□□□□□ -0.87
NPHP4-205ENST00000466897 C9orf129Q5T035 196 aaKnown RBP9.63□□□□□ -0.87
NPHP4-205ENST00000466897 SCXQ7RTU7 201 aa9.63□□□□□ -0.87
NPHP4-205ENST00000466897 PCP2Q8IVA1 136 aa9.63□□□□□ -0.87
NPHP4-205ENST00000466897 TTTY13Q9BZ97 58 aa9.63□□□□□ -0.87
NPHP4-205ENST00000466897 A0A087WYN8 130 aa9.62□□□□□ -0.87
NPHP4-205ENST00000466897 XGP55808 180 aa9.62□□□□□ -0.87
NPHP4-205ENST00000466897 CIRBP-AS1Q8TBR5 109 aa9.62□□□□□ -0.87
NPHP4-205ENST00000466897 SND1-IT1Q9HBX3 110 aa9.62□□□□□ -0.87
NPHP4-205ENST00000466897 APOBP04114 4563 aaKnown RBP9.61□□□□□ -0.87
NPHP4-205ENST00000466897 LOC105371267A0A1B0GV96 52 aa9.61□□□□□ -0.87
NPHP4-205ENST00000466897 PLA2G2DQ9UNK4 145 aa9.61□□□□□ -0.87
NPHP4-205ENST00000466897 PAM16Q9Y3D7 125 aa9.61□□□□□ -0.87
NPHP4-205ENST00000466897 LOC107984156A0A0G2JMH3 177 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 DLEU1O43261 78 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 COX8AP10176 69 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 SPATA45Q537H7 98 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 ARL17AQ8IVW1 177 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 BOD1L2Q8IYS8 172 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 MIR7-3HGQ8N6C7 128 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 LITAFQ99732 161 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 XAGE1AQ9HD64 81 aa9.6□□□□□ -0.87
NPHP4-205ENST00000466897 SMIM6P0DI80 62 aa9.59□□□□□ -0.87
NPHP4-205ENST00000466897 SCGB1D4Q6XE38 83 aa9.59□□□□□ -0.87
NPHP4-205ENST00000466897 DPH3Q96FX2 82 aa9.59□□□□□ -0.87
NPHP4-205ENST00000466897 HERC2O95714 4834 aa9.58□□□□□ -0.88
NPHP4-205ENST00000466897 A0A1W2PNN7 141 aa9.58□□□□□ -0.88
NPHP4-205ENST00000466897 TMEM238C9JI98 176 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms