RNA–Protein interactions for RNA: ENST00000462236.1

COPS3-204, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 5

Gene COPS3, Length 551 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-204ENST00000462236 CDC42SE2Q9NRR3 84 aa2.61□□□□□ -1.99
COPS3-204ENST00000462236 CTXND1A0A1B0GTU2 59 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 M0QXV9 152 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 MGPP08493 103 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 DEFA3P59666 94 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 UBE2G2P60604 165 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 UBE2G1P62253 170 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 Q5W150 140 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 AMMECR1LQ6DCA0 310 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 LINC00304Q8N9R0 145 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 CNFNQ9BYD5 112 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 ACTR3CQ9C0K3 210 aaPredicted RBP2.6□□□□□ -1.99
COPS3-204ENST00000462236 SMDT1Q9H4I9 107 aa2.6□□□□□ -1.99
COPS3-204ENST00000462236 NUPR1O60356 82 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 PET100P0DJ07 73 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 FAM229BQ4G0N7 80 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 LINC00483Q53H64 154 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 LCE3AQ5TA76 89 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 EIF5AL1Q6IS14 154 aaKnown RBP2.59□□□□□ -1.99
COPS3-204ENST00000462236 FP248Q71RG6 208 aaPredicted RBP2.59□□□□□ -1.99
COPS3-204ENST00000462236 FAM19A5Q7Z5A7 132 aaPredicted RBP2.59□□□□□ -1.99
COPS3-204ENST00000462236 KRTAP13-1Q8IUC0 172 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 IMMP2LQ96T52 175 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 C6orf48Q9UBA6 75 aa2.59□□□□□ -1.99
COPS3-204ENST00000462236 TRBV6-5A0A0K0K1A5 114 aa2.58□□□□□ -2
COPS3-204ENST00000462236 SDHAF1A6NFY7 115 aa2.58□□□□□ -2
COPS3-204ENST00000462236 CCDC160A6NGH7 325 aa2.58□□□□□ -2
COPS3-204ENST00000462236 C1orf196B1AJZ1 125 aa2.58□□□□□ -2
COPS3-204ENST00000462236 INMT-MINDY4F8WBC2 141 aa2.58□□□□□ -2
COPS3-204ENST00000462236 COX7A2LO14548 114 aa2.58□□□□□ -2
COPS3-204ENST00000462236 APCSP02743 223 aa2.58□□□□□ -2
COPS3-204ENST00000462236 S100A9P06702 114 aaKnown RBP2.58□□□□□ -2
COPS3-204ENST00000462236 TRGC1P0CF51 173 aa2.58□□□□□ -2
COPS3-204ENST00000462236 AKR1C3P42330 323 aa2.58□□□□□ -2
COPS3-204ENST00000462236 SPAG11BQ08648 103 aa2.58□□□□□ -2
COPS3-204ENST00000462236 TMEM241Q24JQ0 296 aa2.58□□□□□ -2
COPS3-204ENST00000462236 OR2D3Q8NGH3 330 aa2.58□□□□□ -2
COPS3-204ENST00000462236 OR10D4PQ8NGN7 298 aa2.58□□□□□ -2
COPS3-204ENST00000462236 RPL39LQ96EH5 51 aaKnown RBP2.58□□□□□ -2
COPS3-204ENST00000462236 FAM210AQ96ND0 272 aa2.58□□□□□ -2
COPS3-204ENST00000462236 IGHV3OR16-9A0A0B4J2B5 98 aa2.57□□□□□ -2
COPS3-204ENST00000462236 F2Z2F3 143 aa2.57□□□□□ -2
COPS3-204ENST00000462236 POLR2KP53803 58 aaKnown RBP2.57□□□□□ -2
COPS3-204ENST00000462236 UBE2BP63146 152 aa2.57□□□□□ -2
COPS3-204ENST00000462236 UNQ6190/PRO20217Q6UXQ8 127 aa2.57□□□□□ -2
COPS3-204ENST00000462236 C5orf38Q86SI9 138 aa2.57□□□□□ -2
COPS3-204ENST00000462236 BAGE2Q86Y30 109 aa2.57□□□□□ -2
COPS3-204ENST00000462236 C9orf62Q8N4C0 152 aa2.57□□□□□ -2
COPS3-204ENST00000462236 SPRR5A0A1B0GTR4 108 aa2.56□□□□□ -2
COPS3-204ENST00000462236 TMEM223A0PJW6 202 aa2.56□□□□□ -2
COPS3-204ENST00000462236 I3L3M4 83 aa2.56□□□□□ -2
COPS3-204ENST00000462236 NDUFA1O15239 70 aa2.56□□□□□ -2
COPS3-204ENST00000462236 BCE1O60756 84 aa2.56□□□□□ -2
COPS3-204ENST00000462236 RPL28P46779 137 aaKnown RBP2.56□□□□□ -2
COPS3-204ENST00000462236 RPS20P60866 119 aaKnown RBP2.56□□□□□ -2
COPS3-204ENST00000462236 ORMDL2Q53FV1 153 aa2.56□□□□□ -2
COPS3-204ENST00000462236 LYZL1Q6UWQ5 148 aa2.56□□□□□ -2
COPS3-204ENST00000462236 STOML3Q8TAV4 291 aa2.56□□□□□ -2
COPS3-204ENST00000462236 BTF3L4Q96K17 158 aa2.56□□□□□ -2
COPS3-204ENST00000462236 CCDC32Q9BV29 185 aa2.56□□□□□ -2
COPS3-204ENST00000462236 RNASE7Q9H1E1 156 aaKnown RBP2.56□□□□□ -2
COPS3-204ENST00000462236 TP73-AS1Q9UF72 201 aa2.56□□□□□ -2
COPS3-204ENST00000462236 SYNE2Q8WXH0 6885 aaKnown RBP2.56□□□□□ -2
COPS3-204ENST00000462236 MACF1Q9UPN3 7388 aaKnown RBP2.55□□□□□ -2
COPS3-204ENST00000462236 TRBV30A0A0K0K1B3 111 aa2.55□□□□□ -2
COPS3-204ENST00000462236 TRBV27A0A0K0K1C4 114 aa2.55□□□□□ -2
COPS3-204ENST00000462236 MAP1LC3B2A6NCE7 125 aa2.55□□□□□ -2
COPS3-204ENST00000462236 NDUFC2-KCTD14E9PQ53 114 aa2.55□□□□□ -2
COPS3-204ENST00000462236 RPL7L1Q6DKI1 246 aaKnown RBP2.55□□□□□ -2
COPS3-204ENST00000462236 LINC00337Q8N6G1 96 aa2.55□□□□□ -2
COPS3-204ENST00000462236 ORAOV1Q8WV07 137 aa2.55□□□□□ -2
COPS3-204ENST00000462236 MRAP2Q96G30 205 aa2.55□□□□□ -2
COPS3-204ENST00000462236 MARVELD1Q9BSK0 173 aa2.55□□□□□ -2
COPS3-204ENST00000462236 MAP1LC3BQ9GZQ8 125 aa2.55□□□□□ -2
COPS3-204ENST00000462236 UBE2D4Q9Y2X8 147 aa2.55□□□□□ -2
COPS3-204ENST00000462236 C22orf24Q9Y442 160 aa2.55□□□□□ -2
COPS3-204ENST00000462236 ALG5Q9Y673 324 aa2.55□□□□□ -2
COPS3-204ENST00000462236 C7orf77A4D0Y5 90 aa2.54□□□□□ -2
COPS3-204ENST00000462236 A6NDN8 102 aa2.54□□□□□ -2
COPS3-204ENST00000462236 SMKR1H3BMG3 65 aa2.54□□□□□ -2
COPS3-204ENST00000462236 BPY2O14599 106 aa2.54□□□□□ -2
COPS3-204ENST00000462236 UPK1BO75841 260 aa2.54□□□□□ -2
COPS3-204ENST00000462236 PMCHP20382 165 aa2.54□□□□□ -2
COPS3-204ENST00000462236 RPL35P42766 123 aaKnown RBP2.54□□□□□ -2
COPS3-204ENST00000462236 FOXA3P55318 350 aaPredicted RBP2.54□□□□□ -2
COPS3-204ENST00000462236 RNASE13Q5GAN3 156 aaKnown RBP2.54□□□□□ -2
COPS3-204ENST00000462236 TEX261Q6UWH6 196 aa2.54□□□□□ -2
COPS3-204ENST00000462236 Q6ZUT4 128 aa2.54□□□□□ -2
COPS3-204ENST00000462236 C3orf22Q8N5N4 141 aa2.54□□□□□ -2
COPS3-204ENST00000462236 MBD3L1Q8WWY6 194 aa2.54□□□□□ -2
COPS3-204ENST00000462236 SMIM12Q96EX1 92 aa2.54□□□□□ -2
COPS3-204ENST00000462236 PACRGQ96M98 296 aaPredicted RBP2.54□□□□□ -2
COPS3-204ENST00000462236 TIMM21Q9BVV7 248 aa2.54□□□□□ -2
COPS3-204ENST00000462236 TMEM242Q9NWH2 141 aa2.54□□□□□ -2
COPS3-204ENST00000462236 TRBV20OR9-2A0A075B6H5 130 aa2.53□□□□□ -2
COPS3-204ENST00000462236 TRAV13-1A0A0B4J241 112 aa2.53□□□□□ -2
COPS3-204ENST00000462236 DEFA1P59665 94 aa2.53□□□□□ -2
COPS3-204ENST00000462236 IFITM3Q01628 133 aa2.53□□□□□ -2
COPS3-204ENST00000462236 AKR1C8PQ5T2L2 129 aa2.53□□□□□ -2
COPS3-204ENST00000462236 SPAG11AQ6PDA7 123 aa2.53□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms