RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 SPAG11BQ08648 103 aa4.46□□□□□ -1.7
USP54-208ENST00000461520 PEA15Q15121 130 aa4.46□□□□□ -1.7
USP54-208ENST00000461520 KIAA1644Q3SXP7 199 aa4.46□□□□□ -1.7
USP54-208ENST00000461520 OR10D4PQ8NGN7 298 aa4.46□□□□□ -1.7
USP54-208ENST00000461520 A0A1W2PNN7 141 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 D6R8Y8 96 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 PPBPP02775 128 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 RPL39P62891 51 aaKnown RBP4.45□□□□□ -1.7
USP54-208ENST00000461520 HBBP68871 147 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 MRPS36P82909 103 aaKnown RBP4.45□□□□□ -1.7
USP54-208ENST00000461520 RPL18AQ02543 176 aaKnown RBP4.45□□□□□ -1.7
USP54-208ENST00000461520 C9orf116Q5BN46 136 aaPredicted RBP4.45□□□□□ -1.7
USP54-208ENST00000461520 SMIM2Q9BVW6 85 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 KRTAP4-4Q9BYR3 166 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 SPANXA1Q9NS26 97 aa4.45□□□□□ -1.7
USP54-208ENST00000461520 MRPL35Q9NZE8 188 aaKnown RBP4.45□□□□□ -1.7
USP54-208ENST00000461520 IGHV3OR16-9A0A0B4J2B5 98 aa4.44□□□□□ -1.7
USP54-208ENST00000461520 A0A1B0GXF2 115 aa4.44□□□□□ -1.7
USP54-208ENST00000461520 NPYP01303 97 aa4.44□□□□□ -1.7
USP54-208ENST00000461520 MRPL54Q6P161 138 aaKnown RBP4.44□□□□□ -1.7
USP54-208ENST00000461520 FAM104AQ969W3 186 aa4.44□□□□□ -1.7
USP54-208ENST00000461520 IMMP2LQ96T52 175 aa4.44□□□□□ -1.7
USP54-208ENST00000461520 OPRPNQ99935 248 aaPredicted RBP4.44□□□□□ -1.7
USP54-208ENST00000461520 PYGO1Q9Y3Y4 419 aa4.44□□□□□ -1.7
USP54-208ENST00000461520 NDUFA1O15239 70 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 MT-ND6P03923 174 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 TLX1NBP0CAT3 122 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 RAB5AP20339 215 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 IFI27P40305 119 aaPredicted RBP4.43□□□□□ -1.7
USP54-208ENST00000461520 ATP5L2Q7Z4Y8 100 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 ORMDL3Q8N138 153 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 ORAOV1Q8WV07 137 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 PSORS1C2Q9UIG4 136 aa4.43□□□□□ -1.7
USP54-208ENST00000461520 TGIF2-C20orf24A0A0A6YYL0 155 aa4.42□□□□□ -1.7
USP54-208ENST00000461520 NDUFAF8A1L188 74 aa4.42□□□□□ -1.7
USP54-208ENST00000461520 C1orf137Q5JT78 98 aa4.42□□□□□ -1.7
USP54-208ENST00000461520 KRTAP5-4Q6L8H1 288 aa4.42□□□□□ -1.7
USP54-208ENST00000461520 TMEM136Q6ZRR5 245 aa4.42□□□□□ -1.7
USP54-208ENST00000461520 PHF5AQ7RTV0 110 aaKnown RBP4.42□□□□□ -1.7
USP54-208ENST00000461520 LAMTOR2Q9Y2Q5 125 aa4.42□□□□□ -1.7
USP54-208ENST00000461520 IGLV4-3A0A075B6K6 122 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 A0A087WZ39 114 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 DSCR10P59022 87 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 UNQ6190/PRO20217Q6UXQ8 127 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 TMEM141Q96I45 108 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 PRELID3AQ96N28 172 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 C6orf48Q9UBA6 75 aa4.41□□□□□ -1.7
USP54-208ENST00000461520 LPAP08519 4548 aa4.4□□□□□ -1.7
USP54-208ENST00000461520 TRBV30A0A0K0K1B3 111 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 IGLV7-43P04211 117 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 IFITM2Q01629 132 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 PNRC1Q12796 327 aaPredicted RBP4.4□□□□□ -1.71
USP54-208ENST00000461520 KIAA0087Q14695 138 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 LINC00242Q5T6M2 205 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 TEX43Q6ZNM6 134 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 LINC01561Q8N1V8 128 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 DIRC1Q969H9 104 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 MAP1LC3AQ9H492 121 aa4.4□□□□□ -1.71
USP54-208ENST00000461520 FAM168BA1KXE4 195 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 K7EMI3 77 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 UBE2D1P51668 147 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 GAGE2EQ4V326 116 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 ADAMTSL4-AS1Q5T5F5 129 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 PRAC1Q96KF2 57 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 PACRGQ96M98 296 aaPredicted RBP4.39□□□□□ -1.71
USP54-208ENST00000461520 C2orf88Q9BSF0 95 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 GAGE2DQ9UEU5 116 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 CYSLTR1Q9Y271 337 aa4.39□□□□□ -1.71
USP54-208ENST00000461520 LOC389332A0A1B0GUA5 103 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 NDUFC2-KCTD14E9PQ53 114 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 H0Y9J4 135 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 UBE2V1Q13404 147 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 ORMDL2Q53FV1 153 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 C2orf66Q6UXQ4 117 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 Q6ZN92 141 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 FAM19A5Q7Z5A7 132 aaPredicted RBP4.38□□□□□ -1.71
USP54-208ENST00000461520 Q8N8P6 123 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 AMELXQ99217 191 aa4.38□□□□□ -1.71
USP54-208ENST00000461520 M0QXV9 152 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 MT-ND4LP03901 98 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 UBE2BP63146 152 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 C2orf82Q6UX34 121 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 FAM19A3Q7Z5A8 133 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 KRTAP11-1Q8IUC1 163 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 VCX2Q9H322 139 aa4.37□□□□□ -1.71
USP54-208ENST00000461520 IGIPA6NJ69 53 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 ADCYAP1P18509 176 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 G0S2P27469 103 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 RAB14P61106 215 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 SEC11AP67812 179 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 C9orf129Q5T035 196 aaKnown RBP4.36□□□□□ -1.71
USP54-208ENST00000461520 LINC00173Q6ZV60 143 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 NXT2Q9NPJ8 142 aaKnown RBP4.36□□□□□ -1.71
USP54-208ENST00000461520 RPS10P5Q9NQ39 176 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 MUC2Q02817 5179 aa4.36□□□□□ -1.71
USP54-208ENST00000461520 IGLV1-50A0A075B6I6 118 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 CKS1BP61024 79 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 HERVK_113P63121 156 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 C6orf226Q5I0X4 101 aa4.35□□□□□ -1.71
USP54-208ENST00000461520 CLLU1Q5K131 121 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms