RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NBL1P41271 181 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 XCL1P47992 114 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 UCNP55089 124 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 STHQ8IWL8 128 aa8.18□□□□□ -1.1
CPSF3-202ENST00000460593 A0A096LNT2 108 aa8.17□□□□□ -1.1
CPSF3-202ENST00000460593 APCP25054 2843 aa8.17□□□□□ -1.1
CPSF3-202ENST00000460593 IGHV3OR16-9A0A0B4J2B5 98 aa8.17□□□□□ -1.1
CPSF3-202ENST00000460593 B4DSR2 109 aa8.17□□□□□ -1.1
CPSF3-202ENST00000460593 C6orf226Q5I0X4 101 aa8.17□□□□□ -1.1
CPSF3-202ENST00000460593 CCDC168Q8NDH2 2452 aa8.17□□□□□ -1.1
CPSF3-202ENST00000460593 DEFB114Q30KQ6 69 aa8.16□□□□□ -1.1
CPSF3-202ENST00000460593 SPATA3Q8NHX4 192 aa8.16□□□□□ -1.1
CPSF3-202ENST00000460593 TRBV6-4A0A1B0GX49 114 aa8.16□□□□□ -1.1
CPSF3-202ENST00000460593 SNURFQ9Y675 71 aa8.16□□□□□ -1.1
CPSF3-202ENST00000460593 GCN1Q92616 2671 aaKnown RBP8.16□□□□□ -1.1
CPSF3-202ENST00000460593 NANOS2P60321 138 aaKnown RBP8.15□□□□□ -1.1
CPSF3-202ENST00000460593 C9orf116Q5BN46 136 aaPredicted RBP8.15□□□□□ -1.11
CPSF3-202ENST00000460593 A0A096LPF7 62 aa8.14□□□□□ -1.11
CPSF3-202ENST00000460593 IBA57-AS1B1ANH7 110 aa8.14□□□□□ -1.11
CPSF3-202ENST00000460593 TRBV10-1A0A0K0K1A3 114 aa8.14□□□□□ -1.11
CPSF3-202ENST00000460593 PRB1P04280 392 aa8.14□□□□□ -1.11
CPSF3-202ENST00000460593 RPL35AP18077 110 aaKnown RBP8.14□□□□□ -1.11
CPSF3-202ENST00000460593 IL17DQ8TAD2 202 aa8.14□□□□□ -1.11
CPSF3-202ENST00000460593 ZNF469Q96JG9 3925 aaPredicted RBP8.13□□□□□ -1.11
CPSF3-202ENST00000460593 TRGV4A0A0C4DH28 118 aa8.13□□□□□ -1.11
CPSF3-202ENST00000460593 Q8N814 137 aa8.13□□□□□ -1.11
CPSF3-202ENST00000460593 Q8NDZ9 215 aa8.13□□□□□ -1.11
CPSF3-202ENST00000460593 TRAV10A0A0B4J240 114 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 DOPEY1Q5JWR5 2465 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 FAM236DA0A1B0GTK5 79 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 FAM236CP0DP71 79 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 HAMPP81172 84 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 RMI2Q96E14 147 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 A0A087WZ39 114 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 SCXQ7RTU7 201 aa8.12□□□□□ -1.11
CPSF3-202ENST00000460593 C6orf99Q4VX62 202 aa8.11□□□□□ -1.11
CPSF3-202ENST00000460593 PKD1L2Q7Z442 2459 aa8.11□□□□□ -1.11
CPSF3-202ENST00000460593 LINC00959A0A1B0GUT2 108 aa8.11□□□□□ -1.11
CPSF3-202ENST00000460593 WIPF1O43516 503 aa8.11□□□□□ -1.11
CPSF3-202ENST00000460593 LINC00336Q6ZUF6 198 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 UBL5Q9BZL1 73 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 IGLV10-54A0A075B6I4 117 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 TRBV6-8A0A0A6YYG3 113 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 LY6G6DO95868 133 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 PLAC8L1A1L4L8 177 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 Q8N3U1 123 aa8.1□□□□□ -1.11
CPSF3-202ENST00000460593 H7BZZ5 65 aa8.09□□□□□ -1.11
CPSF3-202ENST00000460593 GIG44P09565 113 aaPredicted RBP8.09□□□□□ -1.11
CPSF3-202ENST00000460593 DEFB130BP0DP73 79 aa8.09□□□□□ -1.11
CPSF3-202ENST00000460593 DEFB130AP0DP74 79 aa8.09□□□□□ -1.11
CPSF3-202ENST00000460593 CR1P17927 2039 aa8.09□□□□□ -1.12
CPSF3-202ENST00000460593 TMEM86BQ8N661 226 aa8.08□□□□□ -1.12
CPSF3-202ENST00000460593 JMJD7-PLA2G4BH0Y9G9 81 aa8.08□□□□□ -1.12
CPSF3-202ENST00000460593 NDUFC2O95298 119 aa8.08□□□□□ -1.12
CPSF3-202ENST00000460593 LAMTOR3Q9UHA4 124 aa8.08□□□□□ -1.12
CPSF3-202ENST00000460593 LYPD5Q6UWN5 251 aa8.08□□□□□ -1.12
CPSF3-202ENST00000460593 WFDC11Q8NEX6 87 aa8.08□□□□□ -1.12
CPSF3-202ENST00000460593 MTORP42345 2549 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 TMEM256-PLSCR3K7ERE1 68 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 LINC01356Q8N9X3 169 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 S100A7L2Q5SY68 101 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 Q6YL49 198 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 ZNF843Q8N446 348 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 LINC00474Q9P2X8 69 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 PIEZO1Q92508 2521 aa8.07□□□□□ -1.12
CPSF3-202ENST00000460593 LINC00269Q8N2A0 174 aa8.06□□□□□ -1.12
CPSF3-202ENST00000460593 F8WEM9 126 aa8.06□□□□□ -1.12
CPSF3-202ENST00000460593 LINC01547P58512 204 aaPredicted RBP8.06□□□□□ -1.12
CPSF3-202ENST00000460593 C4orf3Q8WVX3 66 aa8.06□□□□□ -1.12
CPSF3-202ENST00000460593 LINC00167Q96N53 147 aa8.06□□□□□ -1.12
CPSF3-202ENST00000460593 Q6ZQT0 140 aa8.04□□□□□ -1.12
CPSF3-202ENST00000460593 PKIGQ9Y2B9 76 aa8.04□□□□□ -1.12
CPSF3-202ENST00000460593 RBM3P98179 157 aaKnown RBP8.04□□□□□ -1.12
CPSF3-202ENST00000460593 ESM1Q9NQ30 184 aa8.04□□□□□ -1.12
CPSF3-202ENST00000460593 ATP5EP2Q5VTU8 51 aa8.04□□□□□ -1.12
CPSF3-202ENST00000460593 Q6ZVQ6 151 aa8.04□□□□□ -1.12
CPSF3-202ENST00000460593 TM2D3Q9BRN9 247 aa8.04□□□□□ -1.12
CPSF3-202ENST00000460593 FP248Q71RG6 208 aaPredicted RBP8.03□□□□□ -1.12
CPSF3-202ENST00000460593 C6orf223Q8N319 242 aa8.03□□□□□ -1.12
CPSF3-202ENST00000460593 GYPEP15421 78 aa8.02□□□□□ -1.13
CPSF3-202ENST00000460593 C1orf43Q9BWL3 253 aa8.02□□□□□ -1.13
CPSF3-202ENST00000460593 TRAV7A0A075B6U4 112 aa8.02□□□□□ -1.13
CPSF3-202ENST00000460593 NDUFC2-KCTD14E9PQ53 114 aa8.02□□□□□ -1.13
CPSF3-202ENST00000460593 ACANP16112 2415 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 C10orf25Q5T742 122 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 LINC00575Q6W349 94 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 Q6ZQY7 126 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 Q8N9L7 120 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 SERP1Q9Y6X1 66 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 IGSF10Q6WRI0 2623 aa8.01□□□□□ -1.13
CPSF3-202ENST00000460593 Q8IZM0 81 aa8□□□□□ -1.13
CPSF3-202ENST00000460593 C16orf74Q96GX8 76 aa8□□□□□ -1.13
CPSF3-202ENST00000460593 KIAA0087Q14695 138 aa8□□□□□ -1.13
CPSF3-202ENST00000460593 LINC00482Q8N8I6 264 aa7.99□□□□□ -1.13
CPSF3-202ENST00000460593 CCL24O00175 119 aa7.99□□□□□ -1.13
CPSF3-202ENST00000460593 C16orf95Q9H693 158 aa7.99□□□□□ -1.13
CPSF3-202ENST00000460593 A0A0U1RQV1 116 aa7.98□□□□□ -1.13
CPSF3-202ENST00000460593 UNQ6190/PRO20217Q6UXQ8 127 aa7.98□□□□□ -1.13
CPSF3-202ENST00000460593 LINC01006Q8NI28 216 aa7.98□□□□□ -1.13
CPSF3-202ENST00000460593 TRBV10-3A0A0K0K1G6 114 aa7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms