RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 OR10D4PQ8NGN7 298 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 CHTOPQ9Y3Y2 248 aaKnown RBP5.74□□□□□ -1.49
SYNE1-214ENST00000454018 FAT2Q9NYQ8 4349 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 H0Y8G0 127 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 H3BRM9 83 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 S100A2P29034 98 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 C10orf25Q5T742 122 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 HIST3H2BBQ8N257 126 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 CDKN2A-AS1Q9UH64 79 aa5.74□□□□□ -1.49
SYNE1-214ENST00000454018 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-214ENST00000454018 IGHV3-64A0A075B6Q5 118 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 SYS1-DBNDD2H3BUS1 97 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 PLNP26678 52 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 SPATA12Q7Z6I5 190 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 ORAOV1Q8WV07 137 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 KRTAP9-9Q9BYP9 154 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 KRTAP9-4Q9BYQ2 154 aa5.73□□□□□ -1.49
SYNE1-214ENST00000454018 MRPL35Q9NZE8 188 aaKnown RBP5.73□□□□□ -1.49
SYNE1-214ENST00000454018 KRTAP4-8A0A0G2JLE6 195 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 C11orf86A6NJI1 115 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 ZNF22P17026 224 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-214ENST00000454018 CNBPP62633 177 aaKnown RBP5.72□□□□□ -1.49
SYNE1-214ENST00000454018 SPAG11BQ08648 103 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 KRTAP19-4Q3LI73 84 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 HIGD2BQ4VC39 106 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 HIST1H2BLQ99880 126 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 KRTAP4-12Q9BQ66 201 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 HECTD4Q9Y4D8 3996 aa5.72□□□□□ -1.49
SYNE1-214ENST00000454018 IGLV5-52A0A0A0MRZ9 124 aa5.71□□□□□ -1.5
SYNE1-214ENST00000454018 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-214ENST00000454018 SMIM1B2RUZ4 78 aa5.71□□□□□ -1.5
SYNE1-214ENST00000454018 KRTAP10-2P60368 255 aa5.71□□□□□ -1.5
SYNE1-214ENST00000454018 TMEM170BQ5T4T1 132 aa5.71□□□□□ -1.5
SYNE1-214ENST00000454018 DPM2O94777 84 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 C3orf79P0CE67 100 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 KRTDAPP60985 99 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 LINC01545Q5VT33 79 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 Q8IZM0 81 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 C2orf48Q96LS8 159 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 PKD1P98161 4303 aa5.7□□□□□ -1.5
SYNE1-214ENST00000454018 C20orf202A1L168 122 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 IGKCP01834 107 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 PRSS2P07478 247 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 SPINK8P0C7L1 97 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 HERV-K104P63124 156 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 CAMK2N2Q96S95 79 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 PKHD1P08F94 4074 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 IGLV5-39A0A0G2JS06 123 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 C16orf90A8MZG2 172 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 NDUFA1O15239 70 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 CXCL5P42830 114 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 AKR1D1P51857 326 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 SYCNQ0VAF6 134 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 MPLKIPQ8TAP9 179 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 LINC00526Q96FQ7 95 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 CARD19Q96LW7 228 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 PMCHL2Q9BQD1 86 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 TOMM7Q9P0U1 55 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 PKIGQ9Y2B9 76 aa5.69□□□□□ -1.5
SYNE1-214ENST00000454018 TMEM223A0PJW6 202 aa5.68□□□□□ -1.5
SYNE1-214ENST00000454018 SLPIP03973 132 aa5.68□□□□□ -1.5
SYNE1-214ENST00000454018 KIAA0087Q14695 138 aa5.68□□□□□ -1.5
SYNE1-214ENST00000454018 C9orf163Q8N9P6 203 aa5.68□□□□□ -1.5
SYNE1-214ENST00000454018 COX7B2Q8TF08 81 aa5.68□□□□□ -1.5
SYNE1-214ENST00000454018 FUSP35637 526 aaKnown RBP eCLIP5.67□□□□□ -1.5
SYNE1-214ENST00000454018 CKS1BP61024 79 aa5.67□□□□□ -1.5
SYNE1-214ENST00000454018 HERVK_113P61574 105 aa5.67□□□□□ -1.5
SYNE1-214ENST00000454018 C6orf226Q5I0X4 101 aa5.67□□□□□ -1.5
SYNE1-214ENST00000454018 SFTA2Q6UW10 78 aa5.67□□□□□ -1.5
SYNE1-214ENST00000454018 TRBV30A0A0K0K1B3 111 aa5.66□□□□□ -1.5
SYNE1-214ENST00000454018 Q6ZRU5 148 aa5.66□□□□□ -1.5
SYNE1-214ENST00000454018 PRR26Q8N8Z3 221 aa5.65□□□□□ -1.5
SYNE1-214ENST00000454018 DNAH11Q96DT5 4516 aa5.64□□□□□ -1.51
SYNE1-214ENST00000454018 C2orf82Q6UX34 121 aa5.64□□□□□ -1.51
SYNE1-214ENST00000454018 LINC01620Q4KN68 170 aa5.64□□□□□ -1.51
SYNE1-214ENST00000454018 UNQ6190/PRO20217Q6UXQ8 127 aa5.64□□□□□ -1.51
SYNE1-214ENST00000454018 PLEKHB2Q96CS7 222 aa5.64□□□□□ -1.51
SYNE1-214ENST00000454018 C6orf48Q9UBA6 75 aa5.64□□□□□ -1.51
SYNE1-214ENST00000454018 LOC107984640A0A0U1RRK4 108 aa5.63□□□□□ -1.51
SYNE1-214ENST00000454018 E9PLD3 99 aa5.63□□□□□ -1.51
SYNE1-214ENST00000454018 LEPROTO15243 131 aa5.63□□□□□ -1.51
SYNE1-214ENST00000454018 KRTAP10-1P60331 282 aa5.63□□□□□ -1.51
SYNE1-214ENST00000454018 SDIM1Q6ZPB5 146 aa5.63□□□□□ -1.51
SYNE1-214ENST00000454018 KRTAP19-1Q8IUB9 90 aa5.63□□□□□ -1.51
SYNE1-214ENST00000454018 J3QQQ9 107 aa5.62□□□□□ -1.51
SYNE1-214ENST00000454018 TLX1NBP0CAT3 122 aa5.62□□□□□ -1.51
SYNE1-214ENST00000454018 NMUP48645 174 aa5.62□□□□□ -1.51
SYNE1-214ENST00000454018 Q6ZSA8 131 aa5.62□□□□□ -1.51
SYNE1-214ENST00000454018 ZNF625Q96I27 306 aaPredicted RBP5.62□□□□□ -1.51
SYNE1-214ENST00000454018 NDUFC2-KCTD14E9PQ53 114 aa5.61□□□□□ -1.51
SYNE1-214ENST00000454018 LGALS3P17931 250 aaKnown RBP5.61□□□□□ -1.51
SYNE1-214ENST00000454018 TSPEAR-AS2P59090 65 aa5.61□□□□□ -1.51
SYNE1-214ENST00000454018 RPL24P83731 157 aaKnown RBP5.61□□□□□ -1.51
SYNE1-214ENST00000454018 RPL18AQ02543 176 aaKnown RBP5.61□□□□□ -1.51
SYNE1-214ENST00000454018 ATOH7Q8N100 152 aa5.61□□□□□ -1.51
SYNE1-214ENST00000454018 LINC00474Q9P2X8 69 aa5.61□□□□□ -1.51
SYNE1-214ENST00000454018 NDUFA12Q9UI09 145 aa5.61□□□□□ -1.51
SYNE1-214ENST00000454018 DNAH5Q8TE73 4624 aa5.6□□□□□ -1.51
SYNE1-214ENST00000454018 A0A096LNI7 61 aa5.6□□□□□ -1.51
SYNE1-214ENST00000454018 MYMXA0A1B0GTQ4 84 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms