RNA–Protein interactions for RNA: ENST00000449264.2

TNF-208, Transcript of tumor necrosis factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNF, Length 1,676 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNF-208ENST00000449264 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.59□□□□□ -0.87
TNF-208ENST00000449264 A0A087WTM6 91 aa9.59□□□□□ -0.87
TNF-208ENST00000449264 C14orf177Q52M58 125 aa9.59□□□□□ -0.87
TNF-208ENST00000449264 C4orf48Q5BLP8 95 aa9.59□□□□□ -0.87
TNF-208ENST00000449264 NTN5Q8WTR8 489 aaPredicted RBP9.59□□□□□ -0.87
TNF-208ENST00000449264 ZNF625Q96I27 306 aaPredicted RBP9.59□□□□□ -0.87
TNF-208ENST00000449264 NDUFA1O15239 70 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 CXCL5P42830 114 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 TNP2Q05952 138 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 MYMXA0A1B0GTQ4 84 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 COX8AP10176 69 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 UNQ6190/PRO20217Q6UXQ8 127 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 PRO1933Q9H354 126 aa9.58□□□□□ -0.88
TNF-208ENST00000449264 C10orf25Q5T742 122 aa9.57□□□□□ -0.88
TNF-208ENST00000449264 Q8N814 137 aa9.57□□□□□ -0.88
TNF-208ENST00000449264 C2orf48Q96LS8 159 aa9.57□□□□□ -0.88
TNF-208ENST00000449264 Q6ZRU5 148 aa9.56□□□□□ -0.88
TNF-208ENST00000449264 FAT2Q9NYQ8 4349 aa9.56□□□□□ -0.88
TNF-208ENST00000449264 SYCNQ0VAF6 134 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 SLC25A34Q6PIV7 304 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 SCGB1D4Q6XE38 83 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 CARD19Q96LW7 228 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 EREGO14944 169 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 SLPIP03973 132 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 MEIG1Q5JSS6 88 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 SFTA2Q6UW10 78 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 BOD1L2Q8IYS8 172 aa9.55□□□□□ -0.88
TNF-208ENST00000449264 HERV-K104P63124 156 aa9.54□□□□□ -0.88
TNF-208ENST00000449264 C9orf116Q5BN46 136 aaPredicted RBP9.54□□□□□ -0.88
TNF-208ENST00000449264 C6orf48Q9UBA6 75 aa9.54□□□□□ -0.88
TNF-208ENST00000449264 A0A0J9YXY3 114 aa9.53□□□□□ -0.88
TNF-208ENST00000449264 A0A0U1RRA0 63 aa9.53□□□□□ -0.88
TNF-208ENST00000449264 F8WDY8 70 aa9.52□□□□□ -0.89
TNF-208ENST00000449264 FUSP35637 526 aaKnown RBP eCLIP9.52□□□□□ -0.89
TNF-208ENST00000449264 RYR3Q15413 4870 aa9.52□□□□□ -0.89
TNF-208ENST00000449264 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.51□□□□□ -0.89
TNF-208ENST00000449264 TRBV30A0A0K0K1B3 111 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 PFN2P35080 140 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 CNBPP62633 177 aaKnown RBP9.51□□□□□ -0.89
TNF-208ENST00000449264 UQCR10Q9UDW1 63 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 ERG28Q9UKR5 140 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 HECTD4Q9Y4D8 3996 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 TSTD3H0UI37 97 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 DLEU1O43261 78 aa9.51□□□□□ -0.89
TNF-208ENST00000449264 DNAH11Q96DT5 4516 aa9.5□□□□□ -0.89
TNF-208ENST00000449264 SMIM13P0DJ93 91 aa9.5□□□□□ -0.89
TNF-208ENST00000449264 LINC00158P58513 81 aa9.49□□□□□ -0.89
TNF-208ENST00000449264 LINC00336Q6ZUF6 198 aa9.49□□□□□ -0.89
TNF-208ENST00000449264 DAND5Q8N907 189 aa9.48□□□□□ -0.89
TNF-208ENST00000449264 CIRBPQ14011 172 aaKnown RBP9.48□□□□□ -0.89
TNF-208ENST00000449264 LINC01620Q4KN68 170 aa9.48□□□□□ -0.89
TNF-208ENST00000449264 C2orf91Q6ZV80 131 aa9.48□□□□□ -0.89
TNF-208ENST00000449264 MIEN1Q9BRT3 115 aa9.48□□□□□ -0.89
TNF-208ENST00000449264 PKD1P98161 4303 aa9.47□□□□□ -0.89
TNF-208ENST00000449264 IGLV5-52A0A0A0MRZ9 124 aa9.47□□□□□ -0.89
TNF-208ENST00000449264 TMEM238C9JI98 176 aa9.47□□□□□ -0.89
TNF-208ENST00000449264 RPL18AQ02543 176 aaKnown RBP9.47□□□□□ -0.89
TNF-208ENST00000449264 LINC00587B1AMM8 73 aa9.46□□□□□ -0.89
TNF-208ENST00000449264 HNRNPA3P51991 378 aaKnown RBP9.46□□□□□ -0.89
TNF-208ENST00000449264 KRTAP10-2P60368 255 aa9.46□□□□□ -0.89
TNF-208ENST00000449264 ADAMTSL4-AS1Q5T5F5 129 aa9.46□□□□□ -0.89
TNF-208ENST00000449264 LITAFQ99732 161 aa9.46□□□□□ -0.89
TNF-208ENST00000449264 NPC2P61916 151 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 COX17Q14061 63 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 RNF151Q2KHN1 245 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 MIR7-3HGQ8N6C7 128 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 DNAH5Q8TE73 4624 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 NDUFC2-KCTD14E9PQ53 114 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 TIMM17BO60830 172 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 GAGE2EQ4V326 116 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 C9orf163Q8N9P6 203 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 GAGE2DQ9UEU5 116 aa9.45□□□□□ -0.9
TNF-208ENST00000449264 A6NJY4 79 aa9.44□□□□□ -0.9
TNF-208ENST00000449264 HIGD1BQ9P298 99 aa9.44□□□□□ -0.9
TNF-208ENST00000449264 LOC107984640A0A0U1RRK4 108 aa9.43□□□□□ -0.9
TNF-208ENST00000449264 SRSF9Q13242 221 aaKnown RBP eCLIP9.43□□□□□ -0.9
TNF-208ENST00000449264 Q6ZRP5 223 aa9.43□□□□□ -0.9
TNF-208ENST00000449264 GAGE2BQ13066 116 aa9.42□□□□□ -0.9
TNF-208ENST00000449264 HIST1H4GQ99525 98 aa9.42□□□□□ -0.9
TNF-208ENST00000449264 XAGE1AQ9HD64 81 aa9.42□□□□□ -0.9
TNF-208ENST00000449264 TLX1NBP0CAT3 122 aa9.42□□□□□ -0.9
TNF-208ENST00000449264 SPANXDQ9BXN6 97 aa9.42□□□□□ -0.9
TNF-208ENST00000449264 SPANXB1Q9NS25 103 aaPredicted RBP9.42□□□□□ -0.9
TNF-208ENST00000449264 SPANXCQ9NY87 97 aa9.42□□□□□ -0.9
TNF-208ENST00000449264 IGKV2-24A0A0C4DH68 120 aa9.41□□□□□ -0.9
TNF-208ENST00000449264 GCSHP23434 173 aa9.41□□□□□ -0.9
TNF-208ENST00000449264 SND1-IT1Q9HBX3 110 aa9.41□□□□□ -0.9
TNF-208ENST00000449264 A0A096LNI7 61 aa9.4□□□□□ -0.9
TNF-208ENST00000449264 PCP4L1A6NKN8 68 aa9.4□□□□□ -0.9
TNF-208ENST00000449264 DDTP30046 118 aa9.4□□□□□ -0.9
TNF-208ENST00000449264 LINC00308Q8TCZ7 52 aa9.39□□□□□ -0.91
TNF-208ENST00000449264 PGPEP1Q9NXJ5 209 aa9.39□□□□□ -0.91
TNF-208ENST00000449264 EIF4EBP3O60516 100 aaPredicted RBP9.39□□□□□ -0.91
TNF-208ENST00000449264 CHTF8P0CG12 524 aa9.39□□□□□ -0.91
TNF-208ENST00000449264 PTTG1IPP53801 180 aa9.39□□□□□ -0.91
TNF-208ENST00000449264 SOSTDC1Q6X4U4 206 aa9.39□□□□□ -0.91
TNF-208ENST00000449264 PKIGQ9Y2B9 76 aa9.39□□□□□ -0.91
TNF-208ENST00000449264 PKHD1P08F94 4074 aa9.38□□□□□ -0.91
TNF-208ENST00000449264 A0A1B0GVY2 172 aa9.38□□□□□ -0.91
TNF-208ENST00000449264 CTAG1AP78358 180 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms