RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 NDUFC2-KCTD14E9PQ53 114 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 BCE1O60756 84 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 PPP1R17O96001 155 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 IGLC6P0CF74 106 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 KRTAP13-3Q3SY46 172 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 Q6ZVH6 145 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 GATD1Q8NB37 220 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 BORCS7Q96B45 105 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 SMDT1Q9H4I9 107 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 UBE2D4Q9Y2X8 147 aa3.32□□□□□ -1.88
USP49-205ENST00000448078 CSDC2Q9Y534 153 aaKnown RBP3.32□□□□□ -1.88
USP49-205ENST00000448078 TRBV30A0A0K0K1B3 111 aa3.31□□□□□ -1.88
USP49-205ENST00000448078 M0R2T5 61 aa3.31□□□□□ -1.88
USP49-205ENST00000448078 TCAPO15273 167 aa3.31□□□□□ -1.88
USP49-205ENST00000448078 UBE2AP49459 152 aa3.31□□□□□ -1.88
USP49-205ENST00000448078 SFT2D1Q8WV19 159 aa3.31□□□□□ -1.88
USP49-205ENST00000448078 KIR2DL4Q99706 377 aa3.31□□□□□ -1.88
USP49-205ENST00000448078 TGIF2-C20orf24A0A0A6YYL0 155 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 TEX46H3BTG2 121 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 RPL35P42766 123 aaKnown RBP3.3□□□□□ -1.88
USP49-205ENST00000448078 GNG4P50150 75 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 CKS1BP61024 79 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 HERV-K104P63124 156 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 UNQ6190/PRO20217Q6UXQ8 127 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 KCNRGQ8N5I3 272 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 DAND5Q8N907 189 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 S100ZQ8WXG8 99 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 RPL39LQ96EH5 51 aaKnown RBP3.3□□□□□ -1.88
USP49-205ENST00000448078 SMIM12Q96EX1 92 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 C22orf24Q9Y442 160 aa3.3□□□□□ -1.88
USP49-205ENST00000448078 TRBV6-5A0A0K0K1A5 114 aa3.29□□□□□ -1.88
USP49-205ENST00000448078 UMAD1C9J7I0 102 aa3.29□□□□□ -1.88
USP49-205ENST00000448078 DEFA1P59665 94 aa3.29□□□□□ -1.88
USP49-205ENST00000448078 ZNF726P1Q15940 193 aa3.29□□□□□ -1.88
USP49-205ENST00000448078 RPL7L1Q6DKI1 246 aaKnown RBP3.29□□□□□ -1.88
USP49-205ENST00000448078 TMEM242Q9NWH2 141 aa3.29□□□□□ -1.88
USP49-205ENST00000448078 TRBV27A0A0K0K1C4 114 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 ZNF727A8MUV8 499 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 UPK1BO75841 260 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 CTRLP40313 264 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 C6orf226Q5I0X4 101 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 MRPL55Q7Z7F7 128 aaKnown RBP3.28□□□□□ -1.88
USP49-205ENST00000448078 MARVELD1Q9BSK0 173 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 TIMM21Q9BVV7 248 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 C6orf48Q9UBA6 75 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 TP73-AS1Q9UF72 201 aa3.28□□□□□ -1.88
USP49-205ENST00000448078 PPP1R2P9O14990 202 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 HBBP68871 147 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 CCL20P78556 96 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 CENPWQ5EE01 88 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 LINC00299Q6ZSB3 139 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 FAM19A2Q8N3H0 131 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 MBD3L1Q8WWY6 194 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 GNB1LQ9BYB4 327 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 MANBALQ9NQG1 85 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 NDUFA13Q9P0J0 144 aa3.27□□□□□ -1.89
USP49-205ENST00000448078 IGHV3OR16-9A0A0B4J2B5 98 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 A0A1B0GV50 99 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 A8MWL6 223 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 PDE6DO43924 150 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 SPINK1P00995 79 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 POLR2KP53803 58 aaKnown RBP3.26□□□□□ -1.89
USP49-205ENST00000448078 RNASE13Q5GAN3 156 aaKnown RBP3.26□□□□□ -1.89
USP49-205ENST00000448078 C9orf129Q5T035 196 aaKnown RBP3.26□□□□□ -1.89
USP49-205ENST00000448078 NKAPP1Q8N9T2 125 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 FAM213BQ8TBF2 198 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 CNFNQ9BYD5 112 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 MED9Q9NWA0 146 aa3.26□□□□□ -1.89
USP49-205ENST00000448078 TRBV20OR9-2A0A075B6H5 130 aa3.25□□□□□ -1.89
USP49-205ENST00000448078 FXYD6-FXYD2A0A087WZ82 144 aa3.25□□□□□ -1.89
USP49-205ENST00000448078 FOXA3P55318 350 aaPredicted RBP3.25□□□□□ -1.89
USP49-205ENST00000448078 KRTAP13-2Q52LG2 175 aa3.25□□□□□ -1.89
USP49-205ENST00000448078 KRTAP4-4Q9BYR3 166 aa3.25□□□□□ -1.89
USP49-205ENST00000448078 SPANXA1Q9NS26 97 aa3.25□□□□□ -1.89
USP49-205ENST00000448078 GNG13Q9P2W3 67 aa3.25□□□□□ -1.89
USP49-205ENST00000448078 GATCO43716 136 aaKnown RBP3.24□□□□□ -1.89
USP49-205ENST00000448078 RPL32P62910 135 aaKnown RBP3.24□□□□□ -1.89
USP49-205ENST00000448078 LCE3AQ5TA76 89 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 COX6B2Q6YFQ2 88 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 Q6ZN92 141 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 LINC01561Q8N1V8 128 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 LINC00469Q8N7U9 141 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 TMEM191AQ9H0A3 160 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 RNASE7Q9H1E1 156 aaKnown RBP3.24□□□□□ -1.89
USP49-205ENST00000448078 XAGE1AQ9HD64 81 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 TOMM7Q9P0U1 55 aa3.24□□□□□ -1.89
USP49-205ENST00000448078 ZNF706Q9Y5V0 76 aaPredicted RBP3.24□□□□□ -1.89
USP49-205ENST00000448078 A0A1B0GUT8 65 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 RAB5AP20339 215 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 IFI27P40305 119 aaPredicted RBP3.23□□□□□ -1.89
USP49-205ENST00000448078 MRPS36P82909 103 aaKnown RBP3.23□□□□□ -1.89
USP49-205ENST00000448078 KRTAP5-4Q6L8H1 288 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 C2orf82Q6UX34 121 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 LINC01551Q86U37 167 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 CBLN2Q8IUK8 224 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 C2orf88Q9BSF0 95 aa3.23□□□□□ -1.89
USP49-205ENST00000448078 SLC25A20O43772 301 aa3.22□□□□□ -1.89
USP49-205ENST00000448078 GIPP09681 153 aaPredicted RBP3.22□□□□□ -1.89
USP49-205ENST00000448078 RAB4AP20338 218 aa3.22□□□□□ -1.89
USP49-205ENST00000448078 TAGLN2P37802 199 aaKnown RBP3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms