RNA–Protein interactions for RNA: ENST00000446625.6

LIMCH1-204, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 5

Gene LIMCH1, Length 789 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-204ENST00000446625 V9GYV3 84 aa4.4□□□□□ -1.71
LIMCH1-204ENST00000446625 IGKV2D-26A0A0A0MRZ7 120 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 HIGD1CA8MV81 97 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 CFC1BP0CG36 223 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 CTAG1AP78358 180 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 KRTAP19-2Q3LHN2 52 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 FP248Q71RG6 208 aaPredicted RBP4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 LINC00469Q8N7U9 141 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 PACRGQ96M98 296 aaPredicted RBP4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 TIMM21Q9BVV7 248 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 XAGE1AQ9HD64 81 aa4.39□□□□□ -1.71
LIMCH1-204ENST00000446625 A0A1B0GUT8 65 aa4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 SMIM27A0A1W2PRY6 76 aa4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 COLCA2A8K830 154 aa4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 A8MWL6 223 aa4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 RAB4AP20338 218 aa4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 RPL39P62891 51 aaKnown RBP4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 MRPL55Q7Z7F7 128 aaKnown RBP4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 KRTAP13-1Q8IUC0 172 aa4.38□□□□□ -1.71
LIMCH1-204ENST00000446625 RPL37AP8A6NKH3 93 aa4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 KRTAP10-6P60371 365 aaPredicted RBP4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 CT83Q5H943 113 aa4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 NRACQ8N912 160 aa4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 KIR2DL4Q99706 377 aa4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 TMEM191AQ9H0A3 160 aa4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 TP73-AS1Q9UF72 201 aa4.37□□□□□ -1.71
LIMCH1-204ENST00000446625 TRBV24-1A0A075B6N3 115 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 TGIF2-C20orf24A0A0A6YYL0 155 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 IFITM10A6NMD0 228 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 SUMO2P61956 95 aaKnown RBP4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 C3orf22Q8N5N4 141 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 TMEM18Q96B42 140 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 LINC00167Q96N53 147 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 KRTAP4-12Q9BQ66 201 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 SSPOA2VEC9 5147 aa4.36□□□□□ -1.71
LIMCH1-204ENST00000446625 TRAV9-1A0A075B6T8 112 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 GAGE10A6NGK3 116 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 TCAPO15273 167 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 S100PP25815 95 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 UBE2AP49459 152 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 HBBP68871 147 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 RIGQ13278 110 aa4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 MRPL51Q4U2R6 128 aaKnown RBP4.35□□□□□ -1.71
LIMCH1-204ENST00000446625 RAB5AP20339 215 aa4.34□□□□□ -1.71
LIMCH1-204ENST00000446625 MRPS36P82909 103 aaKnown RBP4.34□□□□□ -1.71
LIMCH1-204ENST00000446625 MRPL54Q6P161 138 aaKnown RBP4.34□□□□□ -1.71
LIMCH1-204ENST00000446625 SPAG11AQ6PDA7 123 aa4.34□□□□□ -1.71
LIMCH1-204ENST00000446625 SPANXA1Q9NS26 97 aa4.34□□□□□ -1.71
LIMCH1-204ENST00000446625 NAT8BQ9UHF3 227 aa4.34□□□□□ -1.71
LIMCH1-204ENST00000446625 A0A1B0GXF2 115 aa4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 D6R8Y8 96 aa4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 PPP1R17O96001 155 aa4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 NPYP01303 97 aa4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 RPL32P62910 135 aaKnown RBP4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 ZC2HC1BQ5TFG8 222 aa4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 USH2AO75445 5202 aa4.33□□□□□ -1.72
LIMCH1-204ENST00000446625 TNFRSF6BO95407 300 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 CKS2P33552 79 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 CKS1BP61024 79 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 PRLHP81277 87 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 FAM104BQ5XKR9 115 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 TMEM136Q6ZRR5 245 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 ATP5L2Q7Z4Y8 100 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 KRTAP19-1Q8IUB9 90 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 SMIM2Q9BVW6 85 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 TOMM7Q9P0U1 55 aa4.32□□□□□ -1.72
LIMCH1-204ENST00000446625 PRSS2P07478 247 aa4.31□□□□□ -1.72
LIMCH1-204ENST00000446625 LINC01561Q8N1V8 128 aa4.31□□□□□ -1.72
LIMCH1-204ENST00000446625 PLEKHB2Q96CS7 222 aa4.31□□□□□ -1.72
LIMCH1-204ENST00000446625 GNB1LQ9BYB4 327 aa4.31□□□□□ -1.72
LIMCH1-204ENST00000446625 FLGP20930 4061 aaPredicted RBP4.3□□□□□ -1.72
LIMCH1-204ENST00000446625 TRGC2P03986 189 aa4.3□□□□□ -1.72
LIMCH1-204ENST00000446625 COX19Q49B96 90 aa4.3□□□□□ -1.72
LIMCH1-204ENST00000446625 C6orf226Q5I0X4 101 aa4.3□□□□□ -1.72
LIMCH1-204ENST00000446625 C20orf78Q9BR46 151 aa4.3□□□□□ -1.72
LIMCH1-204ENST00000446625 FCGBPQ9Y6R7 5405 aaPredicted RBP4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 IGLV5-37A0A075B6J1 123 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 IGLV4-3A0A075B6K6 122 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 IGKV2-28A0A075B6P5 120 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 LOC389332A0A1B0GUA5 103 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 A0A1B0GW15 77 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 IGKV2D-28P01615 120 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 FABP9Q0Z7S8 132 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 LCE3BQ5TA77 95 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 Q6ZN92 141 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 FAM19A1Q7Z5A9 133 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 Q8IZM0 81 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 DAND5Q8N907 189 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 Q8NBF4 154 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 ALKBH7Q9BT30 221 aaPredicted RBP4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 TRAPPC1Q9Y5R8 145 aa4.29□□□□□ -1.72
LIMCH1-204ENST00000446625 F8VRH5 84 aa4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 H3BS24 57 aa4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 M0R2T5 61 aa4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 S100A8P05109 93 aa4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 IFI27P40305 119 aaPredicted RBP4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 NKAPP1Q8N9T2 125 aa4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 TMEM141Q96I45 108 aa4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 TMA7Q9Y2S6 64 aaKnown RBP4.28□□□□□ -1.72
LIMCH1-204ENST00000446625 SYNE2Q8WXH0 6885 aaKnown RBP4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms