RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 LINC00526Q96FQ7 95 aa13.58□□□□□ -0.24
CHD3-204ENST00000439235 CAMK2N2Q96S95 79 aa13.58□□□□□ -0.24
CHD3-204ENST00000439235 ZNF815PA8K554 130 aa13.57□□□□□ -0.24
CHD3-204ENST00000439235 HERV-K104P63124 156 aa13.56□□□□□ -0.24
CHD3-204ENST00000439235 C2orf82Q6UX34 121 aa13.56□□□□□ -0.24
CHD3-204ENST00000439235 LINC00518Q8N0U6 118 aa13.56□□□□□ -0.24
CHD3-204ENST00000439235 Q8N814 137 aa13.56□□□□□ -0.24
CHD3-204ENST00000439235 ZNF625Q96I27 306 aaPredicted RBP13.56□□□□□ -0.24
CHD3-204ENST00000439235 HYDINQ4G0P3 5121 aa13.56□□□□□ -0.24
CHD3-204ENST00000439235 KMT2AQ03164 3969 aa13.56□□□□□ -0.24
CHD3-204ENST00000439235 COX8AP10176 69 aa13.55□□□□□ -0.24
CHD3-204ENST00000439235 TNP2Q05952 138 aa13.55□□□□□ -0.24
CHD3-204ENST00000439235 PCP2Q8IVA1 136 aa13.55□□□□□ -0.24
CHD3-204ENST00000439235 TTTY13Q9BZ97 58 aa13.55□□□□□ -0.24
CHD3-204ENST00000439235 SYCNQ0VAF6 134 aa13.54□□□□□ -0.24
CHD3-204ENST00000439235 LINC00336Q6ZUF6 198 aa13.54□□□□□ -0.24
CHD3-204ENST00000439235 UNQ6190/PRO20217Q6UXQ8 127 aa13.53□□□□□ -0.24
CHD3-204ENST00000439235 CARD19Q96LW7 228 aa13.53□□□□□ -0.24
CHD3-204ENST00000439235 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.52□□□□□ -0.25
CHD3-204ENST00000439235 TRBV30A0A0K0K1B3 111 aa13.52□□□□□ -0.25
CHD3-204ENST00000439235 BOD1L2Q8IYS8 172 aa13.52□□□□□ -0.25
CHD3-204ENST00000439235 C14orf144Q96I85 54 aa13.52□□□□□ -0.25
CHD3-204ENST00000439235 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.51□□□□□ -0.25
CHD3-204ENST00000439235 DLEU1O43261 78 aa13.51□□□□□ -0.25
CHD3-204ENST00000439235 CNBPP62633 177 aaKnown RBP13.51□□□□□ -0.25
CHD3-204ENST00000439235 SLC25A34Q6PIV7 304 aa13.51□□□□□ -0.25
CHD3-204ENST00000439235 Q6ZRU5 148 aa13.51□□□□□ -0.25
CHD3-204ENST00000439235 C10orf25Q5T742 122 aa13.5□□□□□ -0.25
CHD3-204ENST00000439235 LINC00587B1AMM8 73 aa13.49□□□□□ -0.25
CHD3-204ENST00000439235 RNF151Q2KHN1 245 aa13.49□□□□□ -0.25
CHD3-204ENST00000439235 MEIG1Q5JSS6 88 aa13.49□□□□□ -0.25
CHD3-204ENST00000439235 SCGB1D4Q6XE38 83 aa13.49□□□□□ -0.25
CHD3-204ENST00000439235 C6orf48Q9UBA6 75 aa13.49□□□□□ -0.25
CHD3-204ENST00000439235 A0A0J9YXY3 114 aa13.48□□□□□ -0.25
CHD3-204ENST00000439235 SLPIP03973 132 aa13.48□□□□□ -0.25
CHD3-204ENST00000439235 UQCR10Q9UDW1 63 aa13.47□□□□□ -0.25
CHD3-204ENST00000439235 ERG28Q9UKR5 140 aa13.47□□□□□ -0.25
CHD3-204ENST00000439235 PRO1933Q9H354 126 aa13.46□□□□□ -0.25
CHD3-204ENST00000439235 TSTD3H0UI37 97 aa13.45□□□□□ -0.26
CHD3-204ENST00000439235 CIRBPQ14011 172 aaKnown RBP13.45□□□□□ -0.26
CHD3-204ENST00000439235 TIMM17BO60830 172 aa13.44□□□□□ -0.26
CHD3-204ENST00000439235 COX17Q14061 63 aa13.44□□□□□ -0.26
CHD3-204ENST00000439235 TP73-AS1Q9UF72 201 aa13.44□□□□□ -0.26
CHD3-204ENST00000439235 PKIGQ9Y2B9 76 aa13.44□□□□□ -0.26
CHD3-204ENST00000439235 DNAH10Q8IVF4 4471 aa13.44□□□□□ -0.26
CHD3-204ENST00000439235 PFN2P35080 140 aa13.43□□□□□ -0.26
CHD3-204ENST00000439235 DNAH2Q9P225 4427 aa13.43□□□□□ -0.26
CHD3-204ENST00000439235 TMEM238C9JI98 176 aa13.42□□□□□ -0.26
CHD3-204ENST00000439235 LINC00158P58513 81 aa13.42□□□□□ -0.26
CHD3-204ENST00000439235 C9orf116Q5BN46 136 aaPredicted RBP13.42□□□□□ -0.26
CHD3-204ENST00000439235 IGLV5-52A0A0A0MRZ9 124 aa13.41□□□□□ -0.26
CHD3-204ENST00000439235 SMIM13P0DJ93 91 aa13.41□□□□□ -0.26
CHD3-204ENST00000439235 C9orf163Q8N9P6 203 aa13.41□□□□□ -0.26
CHD3-204ENST00000439235 MIEN1Q9BRT3 115 aa13.41□□□□□ -0.26
CHD3-204ENST00000439235 A0A0U1RRA0 63 aa13.39□□□□□ -0.27
CHD3-204ENST00000439235 LOC107984640A0A0U1RRK4 108 aa13.39□□□□□ -0.27
CHD3-204ENST00000439235 NDUFC2-KCTD14E9PQ53 114 aa13.39□□□□□ -0.27
CHD3-204ENST00000439235 TLX1NBP0CAT3 122 aa13.39□□□□□ -0.27
CHD3-204ENST00000439235 HIGD1BQ9P298 99 aa13.39□□□□□ -0.27
CHD3-204ENST00000439235 HNRNPA3P51991 378 aaKnown RBP13.38□□□□□ -0.27
CHD3-204ENST00000439235 C2orf91Q6ZV80 131 aa13.38□□□□□ -0.27
CHD3-204ENST00000439235 LITAFQ99732 161 aa13.38□□□□□ -0.27
CHD3-204ENST00000439235 PGPEP1Q9NXJ5 209 aa13.38□□□□□ -0.27
CHD3-204ENST00000439235 DNAH17Q9UFH2 4485 aa13.38□□□□□ -0.27
CHD3-204ENST00000439235 RPL18AQ02543 176 aaKnown RBP13.37□□□□□ -0.27
CHD3-204ENST00000439235 MIR7-3HGQ8N6C7 128 aa13.37□□□□□ -0.27
CHD3-204ENST00000439235 SPANXB1Q9NS25 103 aaPredicted RBP13.37□□□□□ -0.27
CHD3-204ENST00000439235 SPANXDQ9BXN6 97 aa13.36□□□□□ -0.27
CHD3-204ENST00000439235 SPANXCQ9NY87 97 aa13.36□□□□□ -0.27
CHD3-204ENST00000439235 GCSHP23434 173 aa13.35□□□□□ -0.27
CHD3-204ENST00000439235 Q6ZVH6 145 aa13.35□□□□□ -0.27
CHD3-204ENST00000439235 FRAS1Q86XX4 4008 aa13.35□□□□□ -0.27
CHD3-204ENST00000439235 KRTAP10-2P60368 255 aa13.34□□□□□ -0.27
CHD3-204ENST00000439235 SRSF9Q13242 221 aaKnown RBP eCLIP13.34□□□□□ -0.27
CHD3-204ENST00000439235 ADAMTSL4-AS1Q5T5F5 129 aa13.34□□□□□ -0.27
CHD3-204ENST00000439235 FUSP35637 526 aaKnown RBP eCLIP13.33□□□□□ -0.28
CHD3-204ENST00000439235 Q6ZRP5 223 aa13.33□□□□□ -0.28
CHD3-204ENST00000439235 DAND5Q8N907 189 aa13.33□□□□□ -0.28
CHD3-204ENST00000439235 COPS9Q8WXC6 57 aa13.33□□□□□ -0.28
CHD3-204ENST00000439235 GAGE2EQ4V326 116 aa13.32□□□□□ -0.28
CHD3-204ENST00000439235 HIST1H4GQ99525 98 aa13.32□□□□□ -0.28
CHD3-204ENST00000439235 GAGE2DQ9UEU5 116 aa13.32□□□□□ -0.28
CHD3-204ENST00000439235 IFITM1P13164 125 aa13.31□□□□□ -0.28
CHD3-204ENST00000439235 GAGE2BQ13066 116 aa13.31□□□□□ -0.28
CHD3-204ENST00000439235 LINC01620Q4KN68 170 aa13.31□□□□□ -0.28
CHD3-204ENST00000439235 SND1-IT1Q9HBX3 110 aa13.31□□□□□ -0.28
CHD3-204ENST00000439235 A0A1B0GVY2 172 aa13.3□□□□□ -0.28
CHD3-204ENST00000439235 C16orf90A8MZG2 172 aa13.3□□□□□ -0.28
CHD3-204ENST00000439235 TAL2Q16559 108 aa13.3□□□□□ -0.28
CHD3-204ENST00000439235 SDIM1Q6ZPB5 146 aa13.3□□□□□ -0.28
CHD3-204ENST00000439235 PTTG1IPP53801 180 aa13.29□□□□□ -0.28
CHD3-204ENST00000439235 HSD52Q0P140 79 aa13.29□□□□□ -0.28
CHD3-204ENST00000439235 A0A096LNI7 61 aa13.28□□□□□ -0.28
CHD3-204ENST00000439235 LINC00308Q8TCZ7 52 aa13.28□□□□□ -0.28
CHD3-204ENST00000439235 XAGE1AQ9HD64 81 aa13.28□□□□□ -0.28
CHD3-204ENST00000439235 LINC00474Q9P2X8 69 aa13.28□□□□□ -0.28
CHD3-204ENST00000439235 DDTP30046 118 aa13.27□□□□□ -0.29
CHD3-204ENST00000439235 NPC2P61916 151 aa13.27□□□□□ -0.29
CHD3-204ENST00000439235 PPDPFQ9H3Y8 114 aa13.27□□□□□ -0.29
CHD3-204ENST00000439235 IGKV2-24A0A0C4DH68 120 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms