RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 C6orf226Q5I0X4 101 aa15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 C2orf82Q6UX34 121 aa15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 LINC00469Q8N7U9 141 aa15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 CST9LQ9H4G1 147 aa15.46■□□□□ 0.07
RAPGEF1-206ENST00000438647 A0A1W2PNN7 141 aa15.45■□□□□ 0.06
RAPGEF1-206ENST00000438647 Q6ZRP5 223 aa15.45■□□□□ 0.06
RAPGEF1-206ENST00000438647 YPEL4Q96NS1 127 aa15.44■□□□□ 0.06
RAPGEF1-206ENST00000438647 HBDP02042 147 aa15.43■□□□□ 0.06
RAPGEF1-206ENST00000438647 NDUFC2-KCTD14E9PQ53 114 aa15.42■□□□□ 0.06
RAPGEF1-206ENST00000438647 URB1-AS1Q96HZ7 61 aa15.42■□□□□ 0.06
RAPGEF1-206ENST00000438647 IGLV5-45A0A087WSX0 123 aa15.41■□□□□ 0.06
RAPGEF1-206ENST00000438647 GAGE2EQ4V326 116 aa15.41■□□□□ 0.06
RAPGEF1-206ENST00000438647 GAGE2DQ9UEU5 116 aa15.41■□□□□ 0.06
RAPGEF1-206ENST00000438647 A0A096LNJ9 63 aa15.4■□□□□ 0.06
RAPGEF1-206ENST00000438647 CXCL5P42830 114 aa15.4■□□□□ 0.06
RAPGEF1-206ENST00000438647 PDZD11Q5EBL8 140 aa15.39■□□□□ 0.05
RAPGEF1-206ENST00000438647 SMIM1B2RUZ4 78 aa15.38■□□□□ 0.05
RAPGEF1-206ENST00000438647 F8VRH5 84 aa15.37■□□□□ 0.05
RAPGEF1-206ENST00000438647 H3BRM9 83 aa15.37■□□□□ 0.05
RAPGEF1-206ENST00000438647 ATP5LO75964 103 aa15.37■□□□□ 0.05
RAPGEF1-206ENST00000438647 CBLN2Q8IUK8 224 aa15.37■□□□□ 0.05
RAPGEF1-206ENST00000438647 NDUFA6P56556 154 aa15.36■□□□□ 0.05
RAPGEF1-206ENST00000438647 PMCHL1Q16048 86 aa15.36■□□□□ 0.05
RAPGEF1-206ENST00000438647 SLC7A5P1Q8MH63 180 aa15.35■□□□□ 0.05
RAPGEF1-206ENST00000438647 PHF5AQ7RTV0 110 aaKnown RBP15.34■□□□□ 0.05
RAPGEF1-206ENST00000438647 COX7B2Q8TF08 81 aa15.34■□□□□ 0.05
RAPGEF1-206ENST00000438647 CHCHD1Q96BP2 118 aaKnown RBP15.34■□□□□ 0.05
RAPGEF1-206ENST00000438647 FAM168BA1KXE4 195 aa15.33■□□□□ 0.04
RAPGEF1-206ENST00000438647 IGLC3P0DOY3 106 aa15.33■□□□□ 0.04
RAPGEF1-206ENST00000438647 FAM19A5Q7Z5A7 132 aaPredicted RBP15.33■□□□□ 0.04
RAPGEF1-206ENST00000438647 SPINK8P0C7L1 97 aa15.32■□□□□ 0.04
RAPGEF1-206ENST00000438647 SPINK6Q6UWN8 80 aa15.31■□□□□ 0.04
RAPGEF1-206ENST00000438647 PSORS1C2Q9UIG4 136 aa15.3■□□□□ 0.04
RAPGEF1-206ENST00000438647 C9orf129Q5T035 196 aaKnown RBP15.29■□□□□ 0.04
RAPGEF1-206ENST00000438647 BAGE3Q86Y29 109 aa15.28■□□□□ 0.04
RAPGEF1-206ENST00000438647 M0QXV9 152 aa15.27■□□□□ 0.04
RAPGEF1-206ENST00000438647 ZNF22P17026 224 aaPredicted RBP15.26■□□□□ 0.03
RAPGEF1-206ENST00000438647 TRGC2P03986 189 aa15.25■□□□□ 0.03
RAPGEF1-206ENST00000438647 SRSF9Q13242 221 aaKnown RBP eCLIP15.25■□□□□ 0.03
RAPGEF1-206ENST00000438647 C1orf137Q5JT78 98 aa15.25■□□□□ 0.03
RAPGEF1-206ENST00000438647 IGLV5-39A0A0G2JS06 123 aa15.24■□□□□ 0.03
RAPGEF1-206ENST00000438647 HSBP1O75506 76 aa15.24■□□□□ 0.03
RAPGEF1-206ENST00000438647 REG3GQ6UW15 175 aa15.24■□□□□ 0.03
RAPGEF1-206ENST00000438647 KRTAP7-1Q8IUC3 87 aa15.24■□□□□ 0.03
RAPGEF1-206ENST00000438647 UBE2BP63146 152 aa15.23■□□□□ 0.03
RAPGEF1-206ENST00000438647 XAGE1AQ9HD64 81 aa15.23■□□□□ 0.03
RAPGEF1-206ENST00000438647 IFI27L1Q96BM0 104 aa15.22■□□□□ 0.03
RAPGEF1-206ENST00000438647 CHTOPQ9Y3Y2 248 aaKnown RBP15.22■□□□□ 0.03
RAPGEF1-206ENST00000438647 C11orf86A6NJI1 115 aa15.21■□□□□ 0.03
RAPGEF1-206ENST00000438647 TMEM170BQ5T4T1 132 aa15.21■□□□□ 0.03
RAPGEF1-206ENST00000438647 SERTAD4-AS1Q5TG53 156 aa15.21■□□□□ 0.03
RAPGEF1-206ENST00000438647 TRAV12-1A0A0B4J245 112 aa15.2■□□□□ 0.02
RAPGEF1-206ENST00000438647 MT1HL1P0DM35 61 aa15.2■□□□□ 0.02
RAPGEF1-206ENST00000438647 ODF1Q14990 250 aa15.19■□□□□ 0.02
RAPGEF1-206ENST00000438647 LINC01600Q96MT4 127 aa15.19■□□□□ 0.02
RAPGEF1-206ENST00000438647 LBHQ53QV2 105 aaPredicted RBP15.17■□□□□ 0.02
RAPGEF1-206ENST00000438647 SFTA2Q6UW10 78 aa15.17■□□□□ 0.02
RAPGEF1-206ENST00000438647 C22orf24Q9Y442 160 aa15.17■□□□□ 0.02
RAPGEF1-206ENST00000438647 TNXBP22105 4242 aa15.16■□□□□ 0.02
RAPGEF1-206ENST00000438647 IGLV7-43P04211 117 aa15.16■□□□□ 0.02
RAPGEF1-206ENST00000438647 KRTAP11-1Q8IUC1 163 aa15.16■□□□□ 0.02
RAPGEF1-206ENST00000438647 FAM19A2Q8N3H0 131 aa15.16■□□□□ 0.02
RAPGEF1-206ENST00000438647 COLCA2A8K830 154 aa15.15■□□□□ 0.02
RAPGEF1-206ENST00000438647 TP73-AS1Q9UF72 201 aa15.15■□□□□ 0.02
RAPGEF1-206ENST00000438647 SERF1AO75920 110 aa15.12■□□□□ 0.01
RAPGEF1-206ENST00000438647 DIRC1Q969H9 104 aa15.12■□□□□ 0.01
RAPGEF1-206ENST00000438647 PLA2G2DQ9UNK4 145 aa15.12■□□□□ 0.01
RAPGEF1-206ENST00000438647 LEPROTL1O95214 131 aa15.11■□□□□ 0.01
RAPGEF1-206ENST00000438647 COX17Q14061 63 aa15.11■□□□□ 0.01
RAPGEF1-206ENST00000438647 MRPL55Q7Z7F7 128 aaKnown RBP15.11■□□□□ 0.01
RAPGEF1-206ENST00000438647 PFN2P35080 140 aa15.1■□□□□ 0.01
RAPGEF1-206ENST00000438647 ERG28Q9UKR5 140 aa15.1■□□□□ 0.01
RAPGEF1-206ENST00000438647 TMEM223A0PJW6 202 aa15.08■□□□□ 0
RAPGEF1-206ENST00000438647 NUPR1O60356 82 aa15.08■□□□□ 0
RAPGEF1-206ENST00000438647 LINC00310P59036 64 aa15.08■□□□□ 0
RAPGEF1-206ENST00000438647 HSPB8Q9UJY1 196 aa15.07■□□□□ 0
RAPGEF1-206ENST00000438647 NKAPP1Q8N9T2 125 aa15.06■□□□□ 0
RAPGEF1-206ENST00000438647 IGLV5-37A0A075B6J1 123 aa15.05■□□□□ -0
RAPGEF1-206ENST00000438647 H0Y8G0 127 aa15.05■□□□□ -0
RAPGEF1-206ENST00000438647 H0Y9J4 135 aa15.05■□□□□ -0
RAPGEF1-206ENST00000438647 ZNF625Q96I27 306 aaPredicted RBP15.05■□□□□ -0
RAPGEF1-206ENST00000438647 HMCN2Q8NDA2 5059 aa15.04■□□□□ -0
RAPGEF1-206ENST00000438647 KRTAP10-8P60410 259 aa15.02■□□□□ -0
RAPGEF1-206ENST00000438647 LINC00167Q96N53 147 aa15.02■□□□□ -0
RAPGEF1-206ENST00000438647 SND1-IT1Q9HBX3 110 aa15.02■□□□□ -0
RAPGEF1-206ENST00000438647 SCO1O75880 301 aa15□□□□□ -0.01
RAPGEF1-206ENST00000438647 FABP4P15090 132 aa15□□□□□ -0.01
RAPGEF1-206ENST00000438647 ZNF861PO60384 105 aa14.99□□□□□ -0.01
RAPGEF1-206ENST00000438647 PLNP26678 52 aa14.99□□□□□ -0.01
RAPGEF1-206ENST00000438647 RPL24P83731 157 aaKnown RBP14.99□□□□□ -0.01
RAPGEF1-206ENST00000438647 GAGE10A6NGK3 116 aa14.98□□□□□ -0.01
RAPGEF1-206ENST00000438647 RPL37AP8A6NKH3 93 aa14.98□□□□□ -0.01
RAPGEF1-206ENST00000438647 LINC00158P58513 81 aa14.98□□□□□ -0.01
RAPGEF1-206ENST00000438647 BCE1O60756 84 aa14.97□□□□□ -0.01
RAPGEF1-206ENST00000438647 HERV-K104P63124 156 aa14.96□□□□□ -0.01
RAPGEF1-206ENST00000438647 MAP1LC3CQ9BXW4 147 aa14.95□□□□□ -0.02
RAPGEF1-206ENST00000438647 LINC00587B1AMM8 73 aa14.94□□□□□ -0.02
RAPGEF1-206ENST00000438647 HIST1H2BKO60814 126 aa14.94□□□□□ -0.02
RAPGEF1-206ENST00000438647 DPM2O94777 84 aa14.94□□□□□ -0.02
RAPGEF1-206ENST00000438647 HIST1H2BJP06899 126 aa14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms