RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 A0A1B0GX51 115 aa9.49□□□□□ -0.89
COL6A3-207ENST00000433762 DNAL4O96015 105 aa9.49□□□□□ -0.89
COL6A3-207ENST00000433762 COX17Q14061 63 aa9.49□□□□□ -0.89
COL6A3-207ENST00000433762 OTOGQ6ZRI0 2925 aa9.48□□□□□ -0.89
COL6A3-207ENST00000433762 SETXQ7Z333 2677 aaKnown RBP9.48□□□□□ -0.89
COL6A3-207ENST00000433762 C6orf226Q5I0X4 101 aa9.48□□□□□ -0.89
COL6A3-207ENST00000433762 OBSCN-AS1Q96MR7 158 aa9.48□□□□□ -0.89
COL6A3-207ENST00000433762 NOTCH3Q9UM47 2321 aa9.48□□□□□ -0.89
COL6A3-207ENST00000433762 MUC7Q8TAX7 377 aa9.48□□□□□ -0.89
COL6A3-207ENST00000433762 IGKV3OR2-268A0A0C4DH90 116 aa9.47□□□□□ -0.89
COL6A3-207ENST00000433762 NDUFC2O95298 119 aa9.47□□□□□ -0.89
COL6A3-207ENST00000433762 DEFB130BP0DP73 79 aa9.47□□□□□ -0.89
COL6A3-207ENST00000433762 DEFB130AP0DP74 79 aa9.47□□□□□ -0.89
COL6A3-207ENST00000433762 C5orf38Q86SI9 138 aa9.47□□□□□ -0.89
COL6A3-207ENST00000433762 ATP5G1P05496 136 aa9.46□□□□□ -0.89
COL6A3-207ENST00000433762 C9orf66Q5T8R8 295 aa9.46□□□□□ -0.9
COL6A3-207ENST00000433762 CD164L2Q6UWJ8 174 aa9.45□□□□□ -0.9
COL6A3-207ENST00000433762 HIVEP2P31629 2446 aa9.44□□□□□ -0.9
COL6A3-207ENST00000433762 IGHV4-28A0A0C4DH34 117 aa9.44□□□□□ -0.9
COL6A3-207ENST00000433762 PAX4O43316 350 aa9.44□□□□□ -0.9
COL6A3-207ENST00000433762 LINC00167Q96N53 147 aa9.44□□□□□ -0.9
COL6A3-207ENST00000433762 PFN2P35080 140 aa9.43□□□□□ -0.9
COL6A3-207ENST00000433762 KRTAP10-3P60369 221 aa9.43□□□□□ -0.9
COL6A3-207ENST00000433762 ANK3Q12955 4377 aaKnown RBP9.43□□□□□ -0.9
COL6A3-207ENST00000433762 A0A087WYN8 130 aa9.43□□□□□ -0.9
COL6A3-207ENST00000433762 JMJD1CQ15652 2540 aa9.42□□□□□ -0.9
COL6A3-207ENST00000433762 XCL1P47992 114 aa9.42□□□□□ -0.9
COL6A3-207ENST00000433762 APOC4P55056 127 aa9.42□□□□□ -0.9
COL6A3-207ENST00000433762 SMCR5Q8TEV8 140 aa9.42□□□□□ -0.9
COL6A3-207ENST00000433762 NF1P21359 2839 aa9.42□□□□□ -0.9
COL6A3-207ENST00000433762 Q9HAA7 133 aa9.42□□□□□ -0.9
COL6A3-207ENST00000433762 C2CD3Q4AC94 2353 aa9.41□□□□□ -0.9
COL6A3-207ENST00000433762 MTORP42345 2549 aa9.41□□□□□ -0.9
COL6A3-207ENST00000433762 INAFM1C9JVW0 142 aa9.41□□□□□ -0.9
COL6A3-207ENST00000433762 KIAA0087Q14695 138 aa9.41□□□□□ -0.9
COL6A3-207ENST00000433762 HIVEP1P15822 2718 aa9.4□□□□□ -0.9
COL6A3-207ENST00000433762 KLK5Q9Y337 293 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-207ENST00000433762 CYSRT1A8MQ03 144 aa9.39□□□□□ -0.91
COL6A3-207ENST00000433762 CFAP161Q6P656 301 aa9.39□□□□□ -0.91
COL6A3-207ENST00000433762 ORMDL1Q9P0S3 153 aa9.39□□□□□ -0.91
COL6A3-207ENST00000433762 LECT2O14960 151 aa9.39□□□□□ -0.91
COL6A3-207ENST00000433762 OR13C6PQ8NH95 151 aa9.39□□□□□ -0.91
COL6A3-207ENST00000433762 TMEM126AQ9H061 195 aa9.39□□□□□ -0.91
COL6A3-207ENST00000433762 MIFP14174 115 aa9.38□□□□□ -0.91
COL6A3-207ENST00000433762 GAGE2AQ6NT46 116 aa9.38□□□□□ -0.91
COL6A3-207ENST00000433762 B5MCH6 92 aa9.38□□□□□ -0.91
COL6A3-207ENST00000433762 CCDC179H3BU77 68 aa9.38□□□□□ -0.91
COL6A3-207ENST00000433762 CHCHD10Q8WYQ3 142 aaPredicted RBP9.38□□□□□ -0.91
COL6A3-207ENST00000433762 REG3AQ06141 175 aa9.37□□□□□ -0.91
COL6A3-207ENST00000433762 FAM236AA0A1B0GUQ0 79 aa9.36□□□□□ -0.91
COL6A3-207ENST00000433762 FAM236BA0A1B0GV22 79 aa9.36□□□□□ -0.91
COL6A3-207ENST00000433762 LINC00269Q8N2A0 174 aa9.36□□□□□ -0.91
COL6A3-207ENST00000433762 JMJD7-PLA2G4BH0Y9G9 81 aa9.36□□□□□ -0.91
COL6A3-207ENST00000433762 DAD1P61803 113 aa9.36□□□□□ -0.91
COL6A3-207ENST00000433762 Q6JHZ5 121 aa9.36□□□□□ -0.91
COL6A3-207ENST00000433762 NANOS2P60321 138 aaKnown RBP9.35□□□□□ -0.91
COL6A3-207ENST00000433762 LELP1Q5T871 98 aa9.35□□□□□ -0.91
COL6A3-207ENST00000433762 F8P00451 2351 aa9.34□□□□□ -0.91
COL6A3-207ENST00000433762 ANGP03950 147 aaKnown RBP9.34□□□□□ -0.91
COL6A3-207ENST00000433762 HIST1H4AP62805 103 aaKnown RBP9.34□□□□□ -0.91
COL6A3-207ENST00000433762 TMEM256-PLSCR3K7ERE1 68 aa9.34□□□□□ -0.91
COL6A3-207ENST00000433762 WIPF1O43516 503 aa9.34□□□□□ -0.91
COL6A3-207ENST00000433762 Q8N814 137 aa9.34□□□□□ -0.91
COL6A3-207ENST00000433762 Q8NAQ8 132 aa9.34□□□□□ -0.91
COL6A3-207ENST00000433762 C11orf68Q9H3H3 251 aaKnown RBP9.34□□□□□ -0.91
COL6A3-207ENST00000433762 FN1P02751 2386 aaKnown RBP9.33□□□□□ -0.92
COL6A3-207ENST00000433762 A0A0J9YWU9 116 aa9.33□□□□□ -0.92
COL6A3-207ENST00000433762 IGHV4-30-4P0DP06 118 aa9.33□□□□□ -0.92
COL6A3-207ENST00000433762 C14orf132Q9NPU4 83 aa9.33□□□□□ -0.92
COL6A3-207ENST00000433762 NSD1Q96L73 2696 aaPredicted RBP9.33□□□□□ -0.92
COL6A3-207ENST00000433762 H3BQ85 93 aa9.32□□□□□ -0.92
COL6A3-207ENST00000433762 DEFB135Q30KP9 77 aa9.32□□□□□ -0.92
COL6A3-207ENST00000433762 S100A7L2Q5SY68 101 aa9.32□□□□□ -0.92
COL6A3-207ENST00000433762 CLPSL2Q6UWE3 100 aa9.32□□□□□ -0.92
COL6A3-207ENST00000433762 PRR34Q9NV39 138 aa9.32□□□□□ -0.92
COL6A3-207ENST00000433762 GVQW2A0A096LPI5 108 aaPredicted RBP9.32□□□□□ -0.92
COL6A3-207ENST00000433762 SPART-AS1P0CW21 52 aa9.32□□□□□ -0.92
COL6A3-207ENST00000433762 UQCRQO14949 82 aa9.31□□□□□ -0.92
COL6A3-207ENST00000433762 CCKP06307 115 aa9.31□□□□□ -0.92
COL6A3-207ENST00000433762 SS18L2Q9UHA2 77 aa9.31□□□□□ -0.92
COL6A3-207ENST00000433762 SETD2Q9BYW2 2564 aaPredicted RBP9.31□□□□□ -0.92
COL6A3-207ENST00000433762 A0A096LPF7 62 aa9.3□□□□□ -0.92
COL6A3-207ENST00000433762 ATOX1O00244 68 aa9.3□□□□□ -0.92
COL6A3-207ENST00000433762 C9orf129Q5T035 196 aaKnown RBP9.3□□□□□ -0.92
COL6A3-207ENST00000433762 ATP5EP2Q5VTU8 51 aa9.3□□□□□ -0.92
COL6A3-207ENST00000433762 C3orf22Q8N5N4 141 aa9.29□□□□□ -0.92
COL6A3-207ENST00000433762 NIPBLQ6KC79 2804 aaeCLIP9.28□□□□□ -0.92
COL6A3-207ENST00000433762 WFDC9Q8NEX5 89 aa9.28□□□□□ -0.92
COL6A3-207ENST00000433762 LINC00846Q9NV44 126 aa9.28□□□□□ -0.92
COL6A3-207ENST00000433762 NCR3O14931 201 aa9.28□□□□□ -0.92
COL6A3-207ENST00000433762 SPAG11BQ08648 103 aa9.28□□□□□ -0.92
COL6A3-207ENST00000433762 LINC00526Q96FQ7 95 aa9.28□□□□□ -0.92
COL6A3-207ENST00000433762 H3BNG1 76 aa9.27□□□□□ -0.93
COL6A3-207ENST00000433762 CELA1Q9UNI1 258 aa9.27□□□□□ -0.93
COL6A3-207ENST00000433762 LINC00575Q6W349 94 aa9.27□□□□□ -0.93
COL6A3-207ENST00000433762 CUBNO60494 3623 aa9.27□□□□□ -0.93
COL6A3-207ENST00000433762 SLPIP03973 132 aa9.26□□□□□ -0.93
COL6A3-207ENST00000433762 IGLV10-54A0A075B6I4 117 aa9.26□□□□□ -0.93
COL6A3-207ENST00000433762 IGLV6-57P01721 117 aa9.26□□□□□ -0.93
COL6A3-207ENST00000433762 COX7CP15954 63 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms