RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 ZNF561-AS1K7EIQ3 104 aa7.96□□□□□ -1.14
USP40-205ENST00000430158 LEPROTL1O95214 131 aa7.96□□□□□ -1.14
USP40-205ENST00000430158 ZNF22P17026 224 aaPredicted RBP7.96□□□□□ -1.14
USP40-205ENST00000430158 NDUFA6P56556 154 aa7.96□□□□□ -1.14
USP40-205ENST00000430158 SYCNQ0VAF6 134 aa7.96□□□□□ -1.14
USP40-205ENST00000430158 Q6ZRU5 148 aa7.96□□□□□ -1.14
USP40-205ENST00000430158 F8WDY8 70 aa7.95□□□□□ -1.14
USP40-205ENST00000430158 PANO1I0J062 215 aa7.95□□□□□ -1.14
USP40-205ENST00000430158 CIRBPQ14011 172 aaKnown RBP7.95□□□□□ -1.14
USP40-205ENST00000430158 ODF1Q14990 250 aa7.95□□□□□ -1.14
USP40-205ENST00000430158 C10orf25Q5T742 122 aa7.95□□□□□ -1.14
USP40-205ENST00000430158 LINC00469Q8N7U9 141 aa7.95□□□□□ -1.14
USP40-205ENST00000430158 PACRGQ96M98 296 aaPredicted RBP7.95□□□□□ -1.14
USP40-205ENST00000430158 CHAC1Q9BUX1 264 aa7.95□□□□□ -1.14
USP40-205ENST00000430158 MRPL35Q9NZE8 188 aaKnown RBP7.95□□□□□ -1.14
USP40-205ENST00000430158 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.94□□□□□ -1.14
USP40-205ENST00000430158 IGLV5-39A0A0G2JS06 123 aa7.94□□□□□ -1.14
USP40-205ENST00000430158 FABP4P15090 132 aa7.94□□□□□ -1.14
USP40-205ENST00000430158 UNQ6190/PRO20217Q6UXQ8 127 aa7.94□□□□□ -1.14
USP40-205ENST00000430158 CARD19Q96LW7 228 aa7.94□□□□□ -1.14
USP40-205ENST00000430158 CHTOPQ9Y3Y2 248 aaKnown RBP7.94□□□□□ -1.14
USP40-205ENST00000430158 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.94□□□□□ -1.14
USP40-205ENST00000430158 FAT1Q14517 4588 aa7.94□□□□□ -1.14
USP40-205ENST00000430158 F8VRH5 84 aa7.93□□□□□ -1.14
USP40-205ENST00000430158 GHRHP01286 108 aa7.93□□□□□ -1.14
USP40-205ENST00000430158 RNF151Q2KHN1 245 aa7.93□□□□□ -1.14
USP40-205ENST00000430158 Q8IZM0 81 aa7.93□□□□□ -1.14
USP40-205ENST00000430158 HSPB8Q9UJY1 196 aa7.93□□□□□ -1.14
USP40-205ENST00000430158 VPS13BQ7Z7G8 4022 aa7.93□□□□□ -1.14
USP40-205ENST00000430158 SPINK8P0C7L1 97 aa7.92□□□□□ -1.14
USP40-205ENST00000430158 C2orf82Q6UX34 121 aa7.92□□□□□ -1.14
USP40-205ENST00000430158 CAMK2N2Q96S95 79 aa7.92□□□□□ -1.14
USP40-205ENST00000430158 C6orf48Q9UBA6 75 aa7.92□□□□□ -1.14
USP40-205ENST00000430158 HAMPP81172 84 aa7.91□□□□□ -1.14
USP40-205ENST00000430158 TMEM223A0PJW6 202 aa7.9□□□□□ -1.14
USP40-205ENST00000430158 H3BRM9 83 aa7.9□□□□□ -1.14
USP40-205ENST00000430158 NDUFA1O15239 70 aa7.9□□□□□ -1.14
USP40-205ENST00000430158 CHTF8P0CG12 524 aa7.9□□□□□ -1.14
USP40-205ENST00000430158 A0A096LNI7 61 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 SYS1-DBNDD2H3BUS1 97 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 TLX1NBP0CAT3 122 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 SCXQ7RTU7 201 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 CIRBP-AS1Q8TBR5 109 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 SPACA4Q8TDM5 124 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 COX7B2Q8TF08 81 aa7.89□□□□□ -1.15
USP40-205ENST00000430158 TRBV30A0A0K0K1B3 111 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 EPM2AB3EWF7 344 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 H0Y8G0 127 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 C6orf226Q5I0X4 101 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 TMEM170BQ5T4T1 132 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 HIST3H2BBQ8N257 126 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 PMCHL2Q9BQD1 86 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 MAP1LC3CQ9BXW4 147 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 KRTAP4-5Q9BYR2 181 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 TOMM7Q9P0U1 55 aa7.88□□□□□ -1.15
USP40-205ENST00000430158 LOC107984640A0A0U1RRK4 108 aa7.87□□□□□ -1.15
USP40-205ENST00000430158 C3orf79P0CE67 100 aa7.87□□□□□ -1.15
USP40-205ENST00000430158 PTTG1IPP53801 180 aa7.87□□□□□ -1.15
USP40-205ENST00000430158 C9orf116Q5BN46 136 aaPredicted RBP7.87□□□□□ -1.15
USP40-205ENST00000430158 LINC01545Q5VT33 79 aa7.87□□□□□ -1.15
USP40-205ENST00000430158 PRSS2P07478 247 aa7.86□□□□□ -1.15
USP40-205ENST00000430158 CXCL5P42830 114 aa7.86□□□□□ -1.15
USP40-205ENST00000430158 PET117Q6UWS5 81 aa7.86□□□□□ -1.15
USP40-205ENST00000430158 Q6ZRP5 223 aa7.86□□□□□ -1.15
USP40-205ENST00000430158 PLAC8Q9NZF1 115 aa7.86□□□□□ -1.15
USP40-205ENST00000430158 A0A087WYN8 130 aa7.85□□□□□ -1.15
USP40-205ENST00000430158 DPM2O94777 84 aa7.85□□□□□ -1.15
USP40-205ENST00000430158 PLNP26678 52 aa7.85□□□□□ -1.15
USP40-205ENST00000430158 CKS1BP61024 79 aa7.85□□□□□ -1.15
USP40-205ENST00000430158 ZNF625Q96I27 306 aaPredicted RBP7.85□□□□□ -1.15
USP40-205ENST00000430158 HIST1H2BLQ99880 126 aa7.85□□□□□ -1.15
USP40-205ENST00000430158 SRRM2Q9UQ35 2752 aaKnown RBP7.85□□□□□ -1.15
USP40-205ENST00000430158 ABCA13Q86UQ4 5058 aa7.84□□□□□ -1.15
USP40-205ENST00000430158 IGKV2-24A0A0C4DH68 120 aa7.84□□□□□ -1.15
USP40-205ENST00000430158 C5orf52A6NGY3 159 aa7.84□□□□□ -1.15
USP40-205ENST00000430158 IGKCP01834 107 aa7.84□□□□□ -1.15
USP40-205ENST00000430158 Q8N1X5 172 aa7.84□□□□□ -1.15
USP40-205ENST00000430158 NDUFC2-KCTD14E9PQ53 114 aa7.83□□□□□ -1.16
USP40-205ENST00000430158 SNRPEP62304 92 aaKnown RBP7.83□□□□□ -1.16
USP40-205ENST00000430158 PKIGQ9Y2B9 76 aa7.83□□□□□ -1.16
USP40-205ENST00000430158 A0A1W2PNN7 141 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 KRTAP9-7A8MTY7 169 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 SMR3BP02814 79 aaPredicted RBP7.82□□□□□ -1.16
USP40-205ENST00000430158 TSPEAR-AS2P59090 65 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 GAGE2BQ13066 116 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 MAJINQ3KP22 176 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 KRTAP7-1Q8IUC3 87 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 LINC00474Q9P2X8 69 aa7.82□□□□□ -1.16
USP40-205ENST00000430158 KRTAP10-4P60372 401 aaPredicted RBP7.81□□□□□ -1.16
USP40-205ENST00000430158 KRTDAPP60985 99 aa7.81□□□□□ -1.16
USP40-205ENST00000430158 C9orf129Q5T035 196 aaKnown RBP7.81□□□□□ -1.16
USP40-205ENST00000430158 LEPROTO15243 131 aa7.8□□□□□ -1.16
USP40-205ENST00000430158 S100A6P06703 90 aa7.8□□□□□ -1.16
USP40-205ENST00000430158 RPL18AQ02543 176 aaKnown RBP7.8□□□□□ -1.16
USP40-205ENST00000430158 STPG4Q8N801 248 aa7.8□□□□□ -1.16
USP40-205ENST00000430158 FLG2Q5D862 2391 aaPredicted RBP7.79□□□□□ -1.16
USP40-205ENST00000430158 FAM168BA1KXE4 195 aa7.78□□□□□ -1.16
USP40-205ENST00000430158 E9PLD3 99 aa7.78□□□□□ -1.16
USP40-205ENST00000430158 GAGE2EQ4V326 116 aa7.78□□□□□ -1.16
USP40-205ENST00000430158 PLEKHB2Q96CS7 222 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms