RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 BCE1O60756 84 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 PCSK5Q92824 1860 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 MUC22E2RYF6 1773 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-204ENST00000423058 MRPS12O15235 138 aaKnown RBP4.95□□□□□ -1.62
SCN1A-204ENST00000423058 C1orf195Q5TG92 126 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 UNQ6190/PRO20217Q6UXQ8 127 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 PLA2G1BP04054 148 aaKnown RBP4.95□□□□□ -1.62
SCN1A-204ENST00000423058 A0A1B0GUV1 79 aa4.95□□□□□ -1.62
SCN1A-204ENST00000423058 COX6A2Q02221 97 aa4.94□□□□□ -1.62
SCN1A-204ENST00000423058 TP53AIP1Q9HCN2 124 aa4.94□□□□□ -1.62
SCN1A-204ENST00000423058 ANKRD17O75179 2603 aaKnown RBP4.94□□□□□ -1.62
SCN1A-204ENST00000423058 RNASE8Q8TDE3 154 aaKnown RBP4.94□□□□□ -1.62
SCN1A-204ENST00000423058 BRI3O95415 125 aa4.94□□□□□ -1.62
SCN1A-204ENST00000423058 MAPKAPK5-AS1Q8N8E1 139 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 NAV2Q8IVL1 2488 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 ACANP16112 2415 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 HCG22E2RYF7 251 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 POLR2KP53803 58 aaKnown RBP4.93□□□□□ -1.62
SCN1A-204ENST00000423058 LINC00575Q6W349 94 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 SMR3AQ99954 134 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 PIEZO2Q9H5I5 2752 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 IGKV2D-30A0A075B6S6 120 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 IGKV2-30P06310 120 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 ACYP2P14621 99 aa4.93□□□□□ -1.62
SCN1A-204ENST00000423058 TRBV7-7A0A0K0K1E9 115 aa4.92□□□□□ -1.62
SCN1A-204ENST00000423058 A8MZ25 164 aa4.92□□□□□ -1.62
SCN1A-204ENST00000423058 PRLHP81277 87 aa4.92□□□□□ -1.62
SCN1A-204ENST00000423058 J3QL48 77 aa4.92□□□□□ -1.62
SCN1A-204ENST00000423058 FHL2Q14192 279 aa4.92□□□□□ -1.62
SCN1A-204ENST00000423058 FHL3Q13643 280 aa4.92□□□□□ -1.62
SCN1A-204ENST00000423058 LYPD5Q6UWN5 251 aa4.91□□□□□ -1.62
SCN1A-204ENST00000423058 PCOTHQ58A44 107 aa4.91□□□□□ -1.62
SCN1A-204ENST00000423058 C9orf116Q5BN46 136 aaPredicted RBP4.91□□□□□ -1.62
SCN1A-204ENST00000423058 WDR87Q6ZQQ6 2873 aa4.91□□□□□ -1.62
SCN1A-204ENST00000423058 POM121L12Q8N7R1 296 aa4.91□□□□□ -1.62
SCN1A-204ENST00000423058 A0A087WSZ3 146 aa4.91□□□□□ -1.62
SCN1A-204ENST00000423058 ZNF580Q9UK33 172 aa4.91□□□□□ -1.62
SCN1A-204ENST00000423058 XGP55808 180 aa4.9□□□□□ -1.62
SCN1A-204ENST00000423058 COL4A3Q01955 1670 aa4.9□□□□□ -1.62
SCN1A-204ENST00000423058 A0A1B0GU69 56 aa4.9□□□□□ -1.62
SCN1A-204ENST00000423058 YPEL4Q96NS1 127 aa4.9□□□□□ -1.62
SCN1A-204ENST00000423058 PIEZO1Q92508 2521 aa4.9□□□□□ -1.62
SCN1A-204ENST00000423058 SPACA4Q8TDM5 124 aa4.9□□□□□ -1.62
SCN1A-204ENST00000423058 WISP2O76076 250 aa4.9□□□□□ -1.63
SCN1A-204ENST00000423058 LINC00242Q5T6M2 205 aa4.9□□□□□ -1.63
SCN1A-204ENST00000423058 MDFIQ99750 246 aa4.9□□□□□ -1.63
SCN1A-204ENST00000423058 Q6ZS46 218 aa4.9□□□□□ -1.63
SCN1A-204ENST00000423058 C1orf229Q6ZS94 237 aaPredicted RBP4.9□□□□□ -1.63
SCN1A-204ENST00000423058 CRYGAP11844 174 aa4.9□□□□□ -1.63
SCN1A-204ENST00000423058 ODF3L2Q3SX64 289 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 C16orf90A8MZG2 172 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 SMIM1B2RUZ4 78 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 PRR9Q5T870 116 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 TYMSOSQ8TAI1 123 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 PRM2P04554 102 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 CXCL6P80162 114 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 ATP11AUNQ6ZP68 121 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 ABCA12Q86UK0 2595 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 IGIPA6NJ69 53 aa4.89□□□□□ -1.63
SCN1A-204ENST00000423058 LINC00313P59037 77 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 SPAG11AQ6PDA7 123 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 C1orf64Q8NEQ6 169 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 CRIP2P52943 208 aaPredicted RBP4.88□□□□□ -1.63
SCN1A-204ENST00000423058 BRWD1-AS2P59051 145 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 COX8CQ7Z4L0 72 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 Q8N3U1 123 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 TLN2Q9Y4G6 2542 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 MOBPQ13875 183 aa4.88□□□□□ -1.63
SCN1A-204ENST00000423058 TLN1Q9Y490 2541 aaKnown RBP4.87□□□□□ -1.63
SCN1A-204ENST00000423058 RPS28P62857 69 aaKnown RBP4.87□□□□□ -1.63
SCN1A-204ENST00000423058 BEAN1Q3B7T3 259 aa4.87□□□□□ -1.63
SCN1A-204ENST00000423058 Q6ZRP5 223 aa4.87□□□□□ -1.63
SCN1A-204ENST00000423058 SMCR5Q8TEV8 140 aa4.87□□□□□ -1.63
SCN1A-204ENST00000423058 IGLV4-60A0A075B6I1 120 aa4.87□□□□□ -1.63
SCN1A-204ENST00000423058 A0A087WYN8 130 aa4.87□□□□□ -1.63
SCN1A-204ENST00000423058 C22orf24Q9Y442 160 aa4.87□□□□□ -1.63
SCN1A-204ENST00000423058 PRR3P79522 188 aaKnown RBP4.86□□□□□ -1.63
SCN1A-204ENST00000423058 KIF25-AS1Q9Y6Z4 181 aa4.86□□□□□ -1.63
SCN1A-204ENST00000423058 PSPHP1O15172 72 aa4.86□□□□□ -1.63
SCN1A-204ENST00000423058 DEFB116Q30KQ4 102 aa4.85□□□□□ -1.63
SCN1A-204ENST00000423058 C6orf48Q9UBA6 75 aa4.85□□□□□ -1.63
SCN1A-204ENST00000423058 COX6B2Q6YFQ2 88 aa4.85□□□□□ -1.63
SCN1A-204ENST00000423058 AMELXQ99217 191 aa4.85□□□□□ -1.63
SCN1A-204ENST00000423058 LINC00694P0DN24 101 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 SOSTDC1Q6X4U4 206 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 Q6ZRU5 148 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 C2orf91Q6ZV80 131 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 H3BNG1 76 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 C11orf21Q9P2W6 132 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 JMJD1CQ15652 2540 aa4.84□□□□□ -1.63
SCN1A-204ENST00000423058 TRAV22A0A0B4J277 110 aa4.83□□□□□ -1.64
SCN1A-204ENST00000423058 AVPP01185 164 aa4.83□□□□□ -1.64
SCN1A-204ENST00000423058 H3BPC8 53 aa4.83□□□□□ -1.64
SCN1A-204ENST00000423058 CCDC179H3BU77 68 aa4.83□□□□□ -1.64
SCN1A-204ENST00000423058 USP9XQ93008 2570 aaPredicted RBP4.83□□□□□ -1.64
SCN1A-204ENST00000423058 Q8NBF4 154 aa4.83□□□□□ -1.64
SCN1A-204ENST00000423058 PRO3102Q9H379 93 aa4.83□□□□□ -1.64
SCN1A-204ENST00000423058 ZNF295-AS1Q8N0V1 137 aa4.82□□□□□ -1.64
SCN1A-204ENST00000423058 RTL8CO15255 209 aa4.82□□□□□ -1.64
SCN1A-204ENST00000423058 TMEM254Q8TBM7 123 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms