RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 LITAFQ99732 161 aa4.38□□□□□ -1.71
HMGN1-205ENST00000419378 CARHSP1Q9Y2V2 147 aaKnown RBP4.38□□□□□ -1.71
HMGN1-205ENST00000419378 PYGO1Q9Y3Y4 419 aa4.38□□□□□ -1.71
HMGN1-205ENST00000419378 IGLV4-3A0A075B6K6 122 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 A0A096LNI7 61 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 IGKV2-24A0A0C4DH68 120 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 K7EMI3 77 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 RPL37AP61513 92 aaKnown RBP4.37□□□□□ -1.71
HMGN1-205ENST00000419378 SPAG11BQ08648 103 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 SYCNQ0VAF6 134 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 RHEBQ15382 184 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 ORMDL2Q53FV1 153 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 C2orf66Q6UXQ4 117 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 Q6ZRU5 148 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 NOTCH2NLQ7Z3S9 236 aa4.37□□□□□ -1.71
HMGN1-205ENST00000419378 NXT2Q9NPJ8 142 aaKnown RBP4.37□□□□□ -1.71
HMGN1-205ENST00000419378 IGHV3OR16-9A0A0B4J2B5 98 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 APOMO95445 188 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 MAJINQ3KP22 176 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 ADAMTSL4-AS1Q5T5F5 129 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 OR10D4PQ8NGN7 298 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 DPH3Q96FX2 82 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 TMEM141Q96I45 108 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 GNB1LQ9BYB4 327 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 RPS10P5Q9NQ39 176 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 PLAC8Q9NZF1 115 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 CYSLTR1Q9Y271 337 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 PKIGQ9Y2B9 76 aa4.36□□□□□ -1.71
HMGN1-205ENST00000419378 A0A087X002 238 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 TGIF2-C20orf24A0A0A6YYL0 155 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 IGIPA6NJ69 53 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 MT-ND6P03923 174 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 UBE2D1P51668 147 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 COX19Q49B96 90 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 LINC00242Q5T6M2 205 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 ZC2HC1BQ5TFG8 222 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 Q6ZN92 141 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 TEX43Q6ZNM6 134 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 LINC00173Q6ZV60 143 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 ORAOV1Q8WV07 137 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 C2orf48Q96LS8 159 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 CAMK2N2Q96S95 79 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 C2orf88Q9BSF0 95 aa4.35□□□□□ -1.71
HMGN1-205ENST00000419378 A0A087WZ39 114 aa4.34□□□□□ -1.71
HMGN1-205ENST00000419378 APOC3P02656 99 aa4.34□□□□□ -1.71
HMGN1-205ENST00000419378 HNRNPA3P51991 378 aaKnown RBP4.34□□□□□ -1.71
HMGN1-205ENST00000419378 AMELXQ99217 191 aa4.34□□□□□ -1.71
HMGN1-205ENST00000419378 LINC00474Q9P2X8 69 aa4.34□□□□□ -1.71
HMGN1-205ENST00000419378 LOC107984640A0A0U1RRK4 108 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 LINC01546A6NGU7 62 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.33□□□□□ -1.72
HMGN1-205ENST00000419378 SNAPINO95295 136 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 G0S2P27469 103 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 FABP9Q0Z7S8 132 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 SRSF9Q13242 221 aaKnown RBP eCLIP4.33□□□□□ -1.72
HMGN1-205ENST00000419378 NDUFA5Q16718 116 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 SVBPQ8N300 66 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 C7orf33Q8WU49 177 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 TOMM6Q96B49 74 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 TIMM17AQ99595 171 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 VCX2Q9H322 139 aa4.33□□□□□ -1.72
HMGN1-205ENST00000419378 A0A0J9YXV3 536 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 F8WDY8 70 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 NDUFA1O15239 70 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 RPL18AQ02543 176 aaKnown RBP4.32□□□□□ -1.72
HMGN1-205ENST00000419378 KIAA0087Q14695 138 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 FA2HQ7L5A8 372 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 ERASQ7Z444 233 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 FAM19A3Q7Z5A8 133 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 FAM218AQ96MZ4 157 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 MRPL35Q9NZE8 188 aaKnown RBP4.32□□□□□ -1.72
HMGN1-205ENST00000419378 C6orf48Q9UBA6 75 aa4.32□□□□□ -1.72
HMGN1-205ENST00000419378 Q6ZRP5 223 aa4.31□□□□□ -1.72
HMGN1-205ENST00000419378 LINC01561Q8N1V8 128 aa4.31□□□□□ -1.72
HMGN1-205ENST00000419378 SCGB3A1Q96QR1 104 aa4.31□□□□□ -1.72
HMGN1-205ENST00000419378 SMCO4Q9NRQ5 59 aa4.31□□□□□ -1.72
HMGN1-205ENST00000419378 TRAPPC1Q9Y5R8 145 aa4.31□□□□□ -1.72
HMGN1-205ENST00000419378 HMCN2Q8NDA2 5059 aa4.31□□□□□ -1.72
HMGN1-205ENST00000419378 LINC01549A6NIU2 74 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 HERVK_113P63121 156 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 SEC11AP67812 179 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 PRR3P79522 188 aaKnown RBP4.3□□□□□ -1.72
HMGN1-205ENST00000419378 C2orf82Q6UX34 121 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 UNQ6190/PRO20217Q6UXQ8 127 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 C18orf32Q8TCD1 76 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 YPEL4Q96NS1 127 aa4.3□□□□□ -1.72
HMGN1-205ENST00000419378 GEMIN7Q9H840 131 aaKnown RBP4.3□□□□□ -1.72
HMGN1-205ENST00000419378 TNXBP22105 4242 aa4.29□□□□□ -1.72
HMGN1-205ENST00000419378 TRBV30A0A0K0K1B3 111 aa4.29□□□□□ -1.72
HMGN1-205ENST00000419378 A0A1W2PNN7 141 aa4.29□□□□□ -1.72
HMGN1-205ENST00000419378 OXTP01178 125 aa4.29□□□□□ -1.72
HMGN1-205ENST00000419378 TLX1NBP0CAT3 122 aa4.29□□□□□ -1.72
HMGN1-205ENST00000419378 C9orf116Q5BN46 136 aaPredicted RBP4.29□□□□□ -1.72
HMGN1-205ENST00000419378 PACRGQ96M98 296 aaPredicted RBP4.29□□□□□ -1.72
HMGN1-205ENST00000419378 CDKN2A-AS1Q9UH64 79 aa4.29□□□□□ -1.72
HMGN1-205ENST00000419378 A0A096LNJ9 63 aa4.28□□□□□ -1.72
HMGN1-205ENST00000419378 TINCRA0A1B0GVN0 87 aa4.28□□□□□ -1.72
HMGN1-205ENST00000419378 HBDP02042 147 aa4.28□□□□□ -1.72
HMGN1-205ENST00000419378 LINC00614P0C842 121 aa4.28□□□□□ -1.72
HMGN1-205ENST00000419378 CKS1BP61024 79 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms