RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 HIST1H2BDP58876 126 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 HIST1H2BCP62807 126 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 KIAA0087Q14695 138 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 HIST2H2BEQ16778 126 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.97□□□□□ -1.13
SKA1-203ENST00000417656 HIST1H2BHQ93079 126 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 IFI27L1Q96BM0 104 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 PACRGQ96M98 296 aaPredicted RBP7.97□□□□□ -1.13
SKA1-203ENST00000417656 HIST1H2BNQ99877 126 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 HIST1H2BMQ99879 126 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 TOMM7Q9P0U1 55 aa7.97□□□□□ -1.13
SKA1-203ENST00000417656 SMIM1B2RUZ4 78 aa7.96□□□□□ -1.14
SKA1-203ENST00000417656 CIRBPQ14011 172 aaKnown RBP7.96□□□□□ -1.14
SKA1-203ENST00000417656 C10orf25Q5T742 122 aa7.96□□□□□ -1.14
SKA1-203ENST00000417656 SPACA4Q8TDM5 124 aa7.96□□□□□ -1.14
SKA1-203ENST00000417656 KRTAP4-5Q9BYR2 181 aa7.96□□□□□ -1.14
SKA1-203ENST00000417656 FAT1Q14517 4588 aa7.96□□□□□ -1.14
SKA1-203ENST00000417656 ABCA13Q86UQ4 5058 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 F8WDY8 70 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 PRSS2P07478 247 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 SPINK8P0C7L1 97 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 Q5VSD8 79 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 C2orf82Q6UX34 121 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 UNQ6190/PRO20217Q6UXQ8 127 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 MRPL35Q9NZE8 188 aaKnown RBP7.95□□□□□ -1.14
SKA1-203ENST00000417656 C6orf48Q9UBA6 75 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 PKIGQ9Y2B9 76 aa7.95□□□□□ -1.14
SKA1-203ENST00000417656 LOC107984640A0A0U1RRK4 108 aa7.94□□□□□ -1.14
SKA1-203ENST00000417656 C11orf86A6NJI1 115 aa7.94□□□□□ -1.14
SKA1-203ENST00000417656 ZNF22P17026 224 aaPredicted RBP7.94□□□□□ -1.14
SKA1-203ENST00000417656 MAJINQ3KP22 176 aa7.94□□□□□ -1.14
SKA1-203ENST00000417656 Q8IZM0 81 aa7.94□□□□□ -1.14
SKA1-203ENST00000417656 H3BRM9 83 aa7.93□□□□□ -1.14
SKA1-203ENST00000417656 LEPROTL1O95214 131 aa7.93□□□□□ -1.14
SKA1-203ENST00000417656 RPL18AQ02543 176 aaKnown RBP7.93□□□□□ -1.14
SKA1-203ENST00000417656 CHTOPQ9Y3Y2 248 aaKnown RBP7.93□□□□□ -1.14
SKA1-203ENST00000417656 A0A087WYN8 130 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 TRAV12-1A0A0B4J245 112 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 EPM2AB3EWF7 344 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 H0Y8G0 127 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 FABP4P15090 132 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 PTTG1IPP53801 180 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 GAGE2BQ13066 116 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 RNF151Q2KHN1 245 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 SVIPQ8NHG7 77 aa7.92□□□□□ -1.14
SKA1-203ENST00000417656 CKS1BP61024 79 aa7.91□□□□□ -1.14
SKA1-203ENST00000417656 C6orf226Q5I0X4 101 aa7.91□□□□□ -1.14
SKA1-203ENST00000417656 COX7B2Q8TF08 81 aa7.91□□□□□ -1.14
SKA1-203ENST00000417656 DPH3Q96FX2 82 aa7.91□□□□□ -1.14
SKA1-203ENST00000417656 TRBV30A0A0K0K1B3 111 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 F8VRH5 84 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 TMEM170BQ5T4T1 132 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 STPG4Q8N801 248 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 PLAC8Q9NZF1 115 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 HSPB8Q9UJY1 196 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 PCLOQ9Y6V0 5065 aa7.9□□□□□ -1.14
SKA1-203ENST00000417656 CXCL5P42830 114 aa7.89□□□□□ -1.15
SKA1-203ENST00000417656 ODF1Q14990 250 aa7.89□□□□□ -1.15
SKA1-203ENST00000417656 C9orf116Q5BN46 136 aaPredicted RBP7.89□□□□□ -1.15
SKA1-203ENST00000417656 LINC00474Q9P2X8 69 aa7.89□□□□□ -1.15
SKA1-203ENST00000417656 IGLV5-39A0A0G2JS06 123 aa7.88□□□□□ -1.15
SKA1-203ENST00000417656 TLX1NBP0CAT3 122 aa7.88□□□□□ -1.15
SKA1-203ENST00000417656 Q6ZRP5 223 aa7.88□□□□□ -1.15
SKA1-203ENST00000417656 KRTAP4-8A0A0G2JLE6 195 aa7.87□□□□□ -1.15
SKA1-203ENST00000417656 GAGE2EQ4V326 116 aa7.87□□□□□ -1.15
SKA1-203ENST00000417656 COA6Q5JTJ3 125 aaKnown RBP7.87□□□□□ -1.15
SKA1-203ENST00000417656 GAGE2DQ9UEU5 116 aa7.87□□□□□ -1.15
SKA1-203ENST00000417656 TMEM223A0PJW6 202 aa7.86□□□□□ -1.15
SKA1-203ENST00000417656 NDUFC2-KCTD14E9PQ53 114 aa7.86□□□□□ -1.15
SKA1-203ENST00000417656 GHRHP01286 108 aa7.86□□□□□ -1.15
SKA1-203ENST00000417656 PMCHL2Q9BQD1 86 aa7.86□□□□□ -1.15
SKA1-203ENST00000417656 PLA2G1BP04054 148 aaKnown RBP7.85□□□□□ -1.15
SKA1-203ENST00000417656 RPL37AP61513 92 aaKnown RBP7.85□□□□□ -1.15
SKA1-203ENST00000417656 MAP1LC3CQ9BXW4 147 aa7.85□□□□□ -1.15
SKA1-203ENST00000417656 VPS13BQ7Z7G8 4022 aa7.84□□□□□ -1.15
SKA1-203ENST00000417656 A0A1W2PNN7 141 aa7.84□□□□□ -1.15
SKA1-203ENST00000417656 S100A6P06703 90 aa7.84□□□□□ -1.15
SKA1-203ENST00000417656 FAM168BA1KXE4 195 aa7.83□□□□□ -1.16
SKA1-203ENST00000417656 DPM2O94777 84 aa7.83□□□□□ -1.16
SKA1-203ENST00000417656 PLNP26678 52 aa7.83□□□□□ -1.16
SKA1-203ENST00000417656 KRTAP10-4P60372 401 aaPredicted RBP7.83□□□□□ -1.16
SKA1-203ENST00000417656 TMA7Q9Y2S6 64 aaKnown RBP7.83□□□□□ -1.16
SKA1-203ENST00000417656 SYS1-DBNDD2H3BUS1 97 aa7.82□□□□□ -1.16
SKA1-203ENST00000417656 C9orf129Q5T035 196 aaKnown RBP7.82□□□□□ -1.16
SKA1-203ENST00000417656 FAM19A5Q7Z5A7 132 aaPredicted RBP7.82□□□□□ -1.16
SKA1-203ENST00000417656 C7orf33Q8WU49 177 aa7.82□□□□□ -1.16
SKA1-203ENST00000417656 XAGE1AQ9HD64 81 aa7.82□□□□□ -1.16
SKA1-203ENST00000417656 IGKCP01834 107 aa7.81□□□□□ -1.16
SKA1-203ENST00000417656 INAFM2P0DMQ5 153 aa7.81□□□□□ -1.16
SKA1-203ENST00000417656 ZNF625Q96I27 306 aaPredicted RBP7.81□□□□□ -1.16
SKA1-203ENST00000417656 PHF5AQ7RTV0 110 aaKnown RBP7.8□□□□□ -1.16
SKA1-203ENST00000417656 KRTAP7-1Q8IUC3 87 aa7.8□□□□□ -1.16
SKA1-203ENST00000417656 TMEM238LA0A1B0GVL6 79 aa7.79□□□□□ -1.16
SKA1-203ENST00000417656 C3orf79P0CE67 100 aa7.79□□□□□ -1.16
SKA1-203ENST00000417656 PFN2P35080 140 aa7.79□□□□□ -1.16
SKA1-203ENST00000417656 TSPEAR-AS2P59090 65 aa7.79□□□□□ -1.16
SKA1-203ENST00000417656 ERG28Q9UKR5 140 aa7.79□□□□□ -1.16
SKA1-203ENST00000417656 SRRM2Q9UQ35 2752 aaKnown RBP7.79□□□□□ -1.16
SKA1-203ENST00000417656 M0QXV9 152 aa7.78□□□□□ -1.16
SKA1-203ENST00000417656 KRTDAPP60985 99 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms