RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 HERVK_113P63121 156 aa11.31□□□□□ -0.6
VCP-202ENST00000417448 C2orf82Q6UX34 121 aa11.31□□□□□ -0.6
VCP-202ENST00000417448 DPH3Q96FX2 82 aa11.31□□□□□ -0.6
VCP-202ENST00000417448 A0A096LNI7 61 aa11.3□□□□□ -0.6
VCP-202ENST00000417448 TINCRA0A1B0GVN0 87 aa11.3□□□□□ -0.6
VCP-202ENST00000417448 ATP5LO75964 103 aa11.3□□□□□ -0.6
VCP-202ENST00000417448 C2orf48Q96LS8 159 aa11.3□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BKO60814 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BJP06899 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 SPINK8P0C7L1 97 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 S100A1P23297 94 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BOP23527 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BBP33778 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BDP58876 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BCP62807 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST2H2BEQ16778 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BHQ93079 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 IFI27L1Q96BM0 104 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BNQ99877 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 HIST1H2BMQ99879 126 aa11.29□□□□□ -0.6
VCP-202ENST00000417448 FABP4P15090 132 aa11.28□□□□□ -0.6
VCP-202ENST00000417448 SEC11AP67812 179 aa11.28□□□□□ -0.6
VCP-202ENST00000417448 H0Y8G0 127 aa11.27□□□□□ -0.61
VCP-202ENST00000417448 MAJINQ3KP22 176 aa11.27□□□□□ -0.61
VCP-202ENST00000417448 LINC01600Q96MT4 127 aa11.27□□□□□ -0.61
VCP-202ENST00000417448 SMIM1B2RUZ4 78 aa11.26□□□□□ -0.61
VCP-202ENST00000417448 NDUFA1O15239 70 aa11.26□□□□□ -0.61
VCP-202ENST00000417448 IGLC3P0DOY3 106 aa11.26□□□□□ -0.61
VCP-202ENST00000417448 GAGE2BQ13066 116 aa11.26□□□□□ -0.61
VCP-202ENST00000417448 LINC01561Q8N1V8 128 aa11.26□□□□□ -0.61
VCP-202ENST00000417448 PACRGQ96M98 296 aaPredicted RBP11.26□□□□□ -0.61
VCP-202ENST00000417448 C6orf48Q9UBA6 75 aa11.26□□□□□ -0.61
VCP-202ENST00000417448 IGLV5-45A0A087WSX0 123 aa11.25□□□□□ -0.61
VCP-202ENST00000417448 A0A087WYN8 130 aa11.25□□□□□ -0.61
VCP-202ENST00000417448 C11orf86A6NJI1 115 aa11.25□□□□□ -0.61
VCP-202ENST00000417448 C9orf116Q5BN46 136 aaPredicted RBP11.25□□□□□ -0.61
VCP-202ENST00000417448 SPACA4Q8TDM5 124 aa11.25□□□□□ -0.61
VCP-202ENST00000417448 CHTOPQ9Y3Y2 248 aaKnown RBP11.25□□□□□ -0.61
VCP-202ENST00000417448 PRSS2P07478 247 aa11.24□□□□□ -0.61
VCP-202ENST00000417448 ZNF22P17026 224 aaPredicted RBP11.24□□□□□ -0.61
VCP-202ENST00000417448 CIRBPQ14011 172 aaKnown RBP11.24□□□□□ -0.61
VCP-202ENST00000417448 C6orf226Q5I0X4 101 aa11.24□□□□□ -0.61
VCP-202ENST00000417448 LOC107984640A0A0U1RRK4 108 aa11.23□□□□□ -0.61
VCP-202ENST00000417448 LEPROTL1O95214 131 aa11.23□□□□□ -0.61
VCP-202ENST00000417448 RPL18AQ02543 176 aaKnown RBP11.23□□□□□ -0.61
VCP-202ENST00000417448 MUC2Q02817 5179 aa11.22□□□□□ -0.61
VCP-202ENST00000417448 STPG4Q8N801 248 aa11.22□□□□□ -0.61
VCP-202ENST00000417448 COX7B2Q8TF08 81 aa11.22□□□□□ -0.61
VCP-202ENST00000417448 MRPL35Q9NZE8 188 aaKnown RBP11.22□□□□□ -0.61
VCP-202ENST00000417448 PTTG1IPP53801 180 aa11.21□□□□□ -0.61
VCP-202ENST00000417448 CKS1BP61024 79 aa11.21□□□□□ -0.61
VCP-202ENST00000417448 Q8IZM0 81 aa11.21□□□□□ -0.61
VCP-202ENST00000417448 RNF151Q2KHN1 245 aa11.2□□□□□ -0.62
VCP-202ENST00000417448 TMEM170BQ5T4T1 132 aa11.2□□□□□ -0.62
VCP-202ENST00000417448 PMCHL2Q9BQD1 86 aa11.2□□□□□ -0.62
VCP-202ENST00000417448 TRAV12-1A0A0B4J245 112 aa11.19□□□□□ -0.62
VCP-202ENST00000417448 KRTAP9-6A0A140TA67 174 aa11.19□□□□□ -0.62
VCP-202ENST00000417448 H3BRM9 83 aa11.19□□□□□ -0.62
VCP-202ENST00000417448 KRTAP10-8P60410 259 aa11.19□□□□□ -0.62
VCP-202ENST00000417448 GAGE2EQ4V326 116 aa11.19□□□□□ -0.62
VCP-202ENST00000417448 GAGE2DQ9UEU5 116 aa11.19□□□□□ -0.62
VCP-202ENST00000417448 F8WDY8 70 aa11.18□□□□□ -0.62
VCP-202ENST00000417448 Q6ZRP5 223 aa11.18□□□□□ -0.62
VCP-202ENST00000417448 A0A1W2PNN7 141 aa11.17□□□□□ -0.62
VCP-202ENST00000417448 PLAC8Q9NZF1 115 aa11.17□□□□□ -0.62
VCP-202ENST00000417448 TRBV30A0A0K0K1B3 111 aa11.16□□□□□ -0.62
VCP-202ENST00000417448 F8VRH5 84 aa11.16□□□□□ -0.62
VCP-202ENST00000417448 HSPB8Q9UJY1 196 aa11.16□□□□□ -0.62
VCP-202ENST00000417448 IGLV5-39A0A0G2JS06 123 aa11.15□□□□□ -0.62
VCP-202ENST00000417448 FAM168BA1KXE4 195 aa11.15□□□□□ -0.62
VCP-202ENST00000417448 TMEM223A0PJW6 202 aa11.13□□□□□ -0.63
VCP-202ENST00000417448 PKIGQ9Y2B9 76 aa11.13□□□□□ -0.63
VCP-202ENST00000417448 TLX1NBP0CAT3 122 aa11.12□□□□□ -0.63
VCP-202ENST00000417448 ZNF625Q96I27 306 aaPredicted RBP11.12□□□□□ -0.63
VCP-202ENST00000417448 LINC00474Q9P2X8 69 aa11.12□□□□□ -0.63
VCP-202ENST00000417448 NDUFC2-KCTD14E9PQ53 114 aa11.11□□□□□ -0.63
VCP-202ENST00000417448 PRR3P79522 188 aaKnown RBP11.11□□□□□ -0.63
VCP-202ENST00000417448 MAP1LC3CQ9BXW4 147 aa11.11□□□□□ -0.63
VCP-202ENST00000417448 COA6Q5JTJ3 125 aaKnown RBP11.1□□□□□ -0.63
VCP-202ENST00000417448 C9orf129Q5T035 196 aaKnown RBP11.1□□□□□ -0.63
VCP-202ENST00000417448 FAM19A5Q7Z5A7 132 aaPredicted RBP11.1□□□□□ -0.63
VCP-202ENST00000417448 XAGE1AQ9HD64 81 aa11.1□□□□□ -0.63
VCP-202ENST00000417448 FAT4Q6V0I7 4981 aa11.1□□□□□ -0.63
VCP-202ENST00000417448 CXCL5P42830 114 aa11.09□□□□□ -0.63
VCP-202ENST00000417448 PHF5AQ7RTV0 110 aaKnown RBP11.09□□□□□ -0.63
VCP-202ENST00000417448 KRTAP7-1Q8IUC3 87 aa11.09□□□□□ -0.63
VCP-202ENST00000417448 C7orf33Q8WU49 177 aa11.08□□□□□ -0.64
VCP-202ENST00000417448 SYS1-DBNDD2H3BUS1 97 aa11.07□□□□□ -0.64
VCP-202ENST00000417448 DPM2O94777 84 aa11.07□□□□□ -0.64
VCP-202ENST00000417448 PFN2P35080 140 aa11.07□□□□□ -0.64
VCP-202ENST00000417448 IGKCP01834 107 aa11.05□□□□□ -0.64
VCP-202ENST00000417448 C3orf79P0CE67 100 aa11.05□□□□□ -0.64
VCP-202ENST00000417448 TSPEAR-AS2P59090 65 aa11.05□□□□□ -0.64
VCP-202ENST00000417448 A0A0U1RRA0 63 aa11.04□□□□□ -0.64
VCP-202ENST00000417448 PLNP26678 52 aa11.04□□□□□ -0.64
VCP-202ENST00000417448 KRTDAPP60985 99 aa11.04□□□□□ -0.64
VCP-202ENST00000417448 REG3GQ6UW15 175 aa11.03□□□□□ -0.64
VCP-202ENST00000417448 KRTAP11-1Q8IUC1 163 aa11.03□□□□□ -0.64
VCP-202ENST00000417448 SPINK6Q6UWN8 80 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms